BAC Information

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BAC

Clone NameMSMg01-161D07
Chromosome1 (Build37)
Map Location 133,870,336 - 133,870,617
singlet/doubletsinglet
Overlap geneSlc45a3
Upstream geneIl10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1
Downstream geneElk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161D07.T7 (MSMg01no161_d07.b1)MSMg01-161D07.TJ (MSMg01no161_d07.g1)
ACCAG360669AG360670
length1,2601,191
length of high quality
(start - end)
282 (124 - 405)---
definitionCHROMAT_FILE: MSMg01no161_d07.b1 PHD_FILE: MSMg01no161_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:33 2005CHROMAT_FILE: MSMg01no161_d07.g1 PHD_FILE: MSMg01no161_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGGTCCNNNNNNNGCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCTTGTGTAATTCTGGCCCCTTAAAGCTGGGCTCTCAGGAGT
ACCTGCATCTCCAGACCTTAGTAGATATGAAAAGAGGGAGGGCGGACTTG
AAATATAGGCATCTGGGACCTGCCTACCTTCCGCCCCACTCGTATCTATG
AGTTGTGTGTGCCCCTGGTCCAGACCCCAGATACCAGGTAGAACATCTCT
ATGGGTGGAGAGAAGCACTGTAGCTCAGAAGCTGTCTGGGTTGTAAGAGG
ATGGAGATGGAATACTTGTGTTCCTGTTGTCCTGTGTCCTGTGAGCTCCC
CATTCCTCCTCACAAAAGTGCTGGAGGACTGGGCCAGAGATGCCTGCAGG
GAGGGATTTTTTGTGAGGTGACTGGACTAGTGAAGAACGCAGGACTTACA
GAATGAGGGTTTTTTTCCCCCCCCGGTTGGGTCTGGCAAAGTCTCTTATT
TGCTCAAGGAGGACCTGGTCCCTTAAACCCAGTGCAGGTGAGAGCCCAGT
TCCTCCCAGACTGAGGGTGGAGAGTAGAGTGGCTACAAGTCCGTCACCCC
AGAAGTCCGTCACTTCCTCTAGGCTGGGCAGCTTTCCCTCTGGATCACTA
GAAAAAGGGGAGGAGCCAAGTTGAACCCAGAGTAGCCCAGCTAAAACTGA
GGTCTGTCCGGTGCCTCCACCTCAGGACTGTGGGTCAGTATTTTATCTTC
CTTTTTATGACACCCTTTTTTATAAGCCTCACCCTTTTTACAAAGTGTAG
GAACTTTGGACAGGGGGCTCTCTGGTGCCCAGGTTTGTCTCCAGTCCCTT
TTTTCCTAATCTTTTTGTTATCTTATTCTCTTATAGCCAATTTTGTTTGT
GTAGCCCCTCCATGGTGTTTTTTGGTATTTAACTCCTGGCCTCTTTGTAA
TAAATCCTGGGGTTTTTAATGCTGGTCAATTTCTTTTTTCCCTCAAGGTC
CCTTTAGGTTGTATGTGTTTACCTTTACTTGTCTACTATTTTTCCGTTCC
TTTAACTCTCATTATCCATTTTCCATTTTTATTTTTCCTTTCTTTGATCG
TCTTCTCCATAGCTTTTTTTTTTGTTTACTTATATCTTCTATTCCTCTTC
ACTACCTCTCTTATTTCTTTCTTAGTCAAATGTGTACTTGTTACTCTCCT
TACTCTCTTCCTTTCAATTTTCTTTTTTTCTGTTCTTTTTCATTATTTGT
GCTATGTCTT
NNAAGAGAAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTTTAAGGAGNANNNNANAANNNNANANANNNAN
AANNCCCTTAAAGGGANCCAGGNNNCNGGGNNAAANAAANAAGNNAAANA
AAANAANCAGGANAAAANNANNNANANANCAGANNNNNNAGAANAAAAGA
GANNANGGGNAGGAGNCNGGAGAGNANNANNNNAGAAGNNANGGGNCANC
AGAGCACCCCNCAGAGGNNAGGGGANACAGGACNCNAGGGNAAAGGAACG
GCGGCAGGGGGGGAGAGCNGCCGGAGTATCAGAANCNCGGGGGNNNNCAA
AGAGCGAGGGGNACGGNNGAGAAGNCNANGGGAGGCAAACNNCCNCTTTT
TTTTTGCAAACCACNGACNANAAACCCCAGCCACCCCCAAAGCCCCTTAT
TTTTTTTCCCCCCCCCCCAAAGAGNNNNANNNNGAAAAAAAAAAGAGGGA
NNNNNNNNNNANNNNNNNAGNNNGNNNNNNNGANNNANNNNNGNNGNNAG
GNNNNGNNGGNGNNNNGNNAAGNNAGGAGGGNGGNNGGNGNANGGNNGAA
NNNANGGGGGAAGGNGGGAGANGGNNGGGGANGNAGNAGGGNAGAGGGNN
AGNNNAGNANANANAAAGGNNAAGGNNNAGNNNNNAGNANGGNAAAAANN
AAGNNGGGGGGNGAAGGNNGGNAANNNNAGGGNNNAGGAGGNGGAAGNNA
GAAGGNNAGAAGNNNNAAAGAAAANNNGGGGAAAAGGAGGGGAGAAGAGG
GAGGGAGGAAAAAANAAAAAGAAAAAGGAGGGGGAGAGGAAAGAGGAAAG
AAGAAAAGAAGGGAGGAAAAAGAGGAGAAAAGGAGAGAGAAAGAAGAGAA
AGAGAAAGAGGGAAAAAGAGGGAGAGGGAAAAAAGGAGGAGAGGAAAGGG
GAAGAAAGAAAAGAAGAAGAGAAGGAAAGAGGGAGAGAAGGAGGAAAAAA
GAGAGAGAAAAAGAGAAGAAGGGGAAGAGGAGAAAGAAAAAGGGAGAGGA
AGGGAAAGAAGAGAGAAAAAGANAAGAGAGAAGAAGAAAAGNAGAAGGGG
AGAGAAGGAGAAGAGGAAGGAAAGAGAAAAAAGAGGAGAGGAGAAAAAGG
GAGGAAAGGAAAAGGAAAAAAGAGAAGAAAAGGAAAGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_d07.b1 MSMg01no161_d07.b1 CHROMAT_FILE:
MSMg01no161_d07.b1 PHD_FILE: MSMg01no161_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:33 2005
         (282 letters)



>mm_chr1_133870136_133870817
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatatgaaaagagggagggcggacttgaaatataggcatctgggacctgcctaccttccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatatgaaaagagggagggcggacttgaaatataggcatctgggacctgcctaccttccg 260

                                                                       
Query: 61  ccccactcgtatctatgagttgtgtgtgcccctggtccagaccccagataccaggtagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccccactcgtatctatgagttgtgtgtgcccctggtccagaccccagataccaggtagaa 320

                                                                       
Query: 121 catctctatgggtggagagaagcactgtagctcagaagctgtctgggttgtaagaggatg 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 catctctatgggtggagagaagcactgtagctcagaagctgcctgggttgtaagaggatg 380

                                                                       
Query: 181 gagatggaatacttgtgttcctgttgtcctgtgtcctgtgagctccccattcctcctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagatggaatacttgtgttcctgttgtcctgtgtcctgtgagctccccattcctcctcac 440

                                                     
Query: 241 aaaagtgctggaggactgggccagagatgcctgcagggaggg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagtgctggaggactgggccagagatgcctgcagggaggg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)