BAC Information

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BAC

Clone NameMSMg01-161E06
Chromosome1 (Build37)
Map Location 50,723,893 - 50,724,230
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161E06.T7 (MSMg01no161_e06.b1)MSMg01-161E06.TJ (MSMg01no161_e06.g1)
ACCAG360715AG360716
length1,2511,181
length of high quality
(start - end)
378 (74 - 451)147 (520 - 666)
definitionCHROMAT_FILE: MSMg01no161_e06.b1 PHD_FILE: MSMg01no161_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:40 2005CHROMAT_FILE: MSMg01no161_e06.g1 PHD_FILE: MSMg01no161_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCACTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TACATCTTTATCTAAAACCTAATAGGAGAAAAATGGCTTCAAGGCTTCTA
GGAAGATGGTCTTAAAGCCTATGCCCACAGTGATACACTTCCTCCAACAA
TGCCATACCTACTTTAATAAGACAACGCCTCCAAATAGTGCCATTCCCTG
GCCCAAATATATTCAAATGACCACAGAGACATAGATGATTTAGATGCTGT
ACAAACATTCAGACAATGATGAAGGGAGTATTTTTGTTTGTTTGTTTGTT
TGCTTGTTTGTTTTTGTAAGAAGGATTACACAATCCCATTTGTTGAATCT
ATTTGTATGTGGTGACTCCAGAGGTTAAGTGCCTACAGATATGATATAAA
TGTTTTAGCCATTTATAATTGTACATTAATTCTTGTGTAGTATTCCTTTC
TTTTTTTTCCCACCCCCCCCTAACACACACACACATATATATAAAAAGAT
TATTGATTATATATATATATCACAAGCACCTAATTTTCTTCAGGACTTTA
AATACAAGTAAAGTTAAAAAACATAGACTTTAAAGATAAGTGAAATTATA
CCAGACTGAAACAGGCTTTCAGGTATTACAGTCACTTACTAGCTATCTAA
ATTTTATGATTTAAACACATATATCTAAAGTGTACAGACTAAATCTACAT
ACCAGGGAAAAGATTTGTCTTTTTTGCTTCTGGGTTACCTCATTTACCAC
CAGTGTTTTTAGCTCTACCCTCCTAACTGGAAATCTCATAATTTTGTTTT
TCTTAATATCTATCTGGAACATATTTCATTGTGTAAATGTACCTTAAACT
TATTATTCCTTCATTAGTTGATGAAAATTTAGTCCAGTTTCAAATTTTGC
CTTTTATGAATAAAGCAGTCATAACTTTTGTTTGAACATTTTTTTTTCAT
TAAGATGTCACATTCCTTTTTGTTATAAAATGAACAAAAAATAATGTTTT
GTATTGGTTGTCCACTATCCTTTTTCACCTCTTTAATTTAATTCCTATAC
TTTTTTTCATTCATTTCTGTGTTCAATTTTTTCTTCTCCTCTCTCTTTTT
TTTAAAACTTTTTCTTTTTTTCTTACCTTCGTCTTTCTTTCTCTTCTTTT
TTATTTTCTATTTATCTAATTTTATTGCCTCTTTTAATTCATCCTTATTA
CTCTTTCTATCCTTATTTTACTATGTTCTATTAACTTCATTAACGATTAT
T
NNGGCAGAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATGAAATTCCTAGCCAAATGGATGGACCTGGA
GGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACAATA
TGTATTCACTGATAAGGGGATATTAGCCCCAAACCTAGGATACCCAAGAT
ATAAAATATAATTTGCTAAACACATGAAACTCAAGAAAAATGAAAACTGA
AGTGTGGACACTATGCCCCTCCTTAGATTTGGGAACAAAATACCCATGGA
AGGAGTTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATGT
AAAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTG
ATTCCATTGCATACACTAGCAAGATTTTATTGAAAGGACCCAAATGTATT
TTTTTTTTCCCCCCCCCCCGCCGGGGCCTAGCAAACACAAAAAAGAAGGC
TCGCGGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGCTAGA
GAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAAC
ATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATATA
TCAAAAGATGGCCTAGTTGGCCATCACTGCAAAGAGAGGCCCATTGAACT
TGCAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAAAAGGGG
AAGTGGTTGGTCAGGGAAGTGGTGTTTGTTTTTTTTTCCTCTTTTCTTTA
TTTTTTTTCTTTTTCATTTCTTTTTAATCTAATGTTTATCTTTTCTTTAT
CTTTATTTATTCTACTTTATACTCTCTTTCCTTTCCTCTCTACTACTTTT
TTCTTTTTCTTTTTATTTTTTTTTATTTTTTTATTTTTTTTTCTATTCTA
TTTTTCTTTTTTTTCTTAATTTTTATATTATTTTTTACTTCTATATTGTT
TTTTCTTTTATATTTTTATGTTTTTTTTTGTTACTCTCTACTTTATTTTT
TTCTTTATTTTTTTACTTTTTTTATTTACTCTTTTTTATTTTTTGTTACA
TCTTCTAATTATTTTTTTTATATATTTTGTATTTTTTGTCTTTTTATTTC
TTTTCTTCTTTCTCCTCTTTCTTCATTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_e06.b1 MSMg01no161_e06.b1 CHROMAT_FILE:
MSMg01no161_e06.b1 PHD_FILE: MSMg01no161_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:40 2005
         (378 letters)



>mm_chr1_50723453_50724230
          Length = 778

 Score =  630 bits (326), Expect = 0.0
 Identities = 335/338 (99%)
 Strand = Plus / Minus

                                                                       
Query: 40  taaagcctatgcccacagtgatacacttcctccaacaatgccatacctactttaataaga 99
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 taaagcctatgcccacagtgatacacttcctccaacaatgccatacctactttaataaga 719

                                                                       
Query: 100 caacgcctccaaatagtgccattccctggcccaaatatattcaaatgaccacagagacat 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 caacgcctccaaatagtgccattccctggcccaaatatattcaaatgaccacagagacat 659

                                                                       
Query: 160 agatgatttagatgctgtacaaacattcagacaatgatgaagggagtatttttgtttgtt 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 agatgatttagatgctgtacaaacattcagacaatgatgaagggagtatttttgtttgtt 599

                                                                       
Query: 220 tgtttgtttgcttgtttgtttttgtaagaaggattacacaatcccatttgttgaatctat 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgtttgtttgcttgtttgtttttgtaagaaggattacacaatcccatttgttgaatctat 539

                                                                       
Query: 280 ttgtatgtggtgactccagaggttaagtgcctacagatatgatataaatgttttagccat 339
           ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||
Sbjct: 538 ttgtatgtggtgactccagaggttaagtgcctacatatatgatataaatgtagtagccat 479

                                                 
Query: 340 ttataattgtacattaattcttgtgtagtattcctttc 377
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttataattgtacattaattcttgtgtagtattcctttc 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)