Query= MSMg01no162_e01.b1 MSMg01no162_e01.b1 CHROMAT_FILE:
MSMg01no162_e01.b1 PHD_FILE: MSMg01no162_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:34 2005
(667 letters)
>mm_chr1_73129815_73130890
Length = 1076
Score = 1208 bits (625), Expect = 0.0
Identities = 658/673 (97%), Gaps = 9/673 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttcaggaacttcctccagaccctccctcatgagtcccctggccacccactccc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ggaattcttcaggaacttcctccagaccctccctcatgagtcccctggccacccactccc 691
Query: 64 tgggctctgtgctatggagagccagttatttacctggcagacaagaggctggagaattct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tgggctctgtgctatggagagccagttatttacctggcagacaagaggctggagaattct 631
Query: 124 aaggaaaaccttaaggatccacagaagaggtctatagattctagta--ta--ggtcttcc 179
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 630 ctggaaaaccttaaggatccacagaagaggtctatagattctagtatttaagggtcttcc 571
Query: 180 catgagaactaccacttgcagcttaatcaacccaaatgatagagcttgattaagtaaaac 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 570 catgagaactaccacttgcagcttaatcaacccaaatgatagaacttgattaagtaaaac 511
Query: 240 ccaacagcccccaaagccctgctagcaagcacacactccaatccatttcccttaaattat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ccaacagcccccaaagccctgctagcaagcacacactccaatccatttcccttaaattat 451
Query: 300 aaagtgcagctgacatgcaaagagtgtggacctgcacagctcaagtaattatattaaaaa 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 450 aaagtgcagctgacatgcaaagagtgtggatctgcacagctcaagtaattatattaaaaa 391
Query: 360 cacctgtggctcccacttgacttaaacaaaatctcgccaatcattctgaatgtttgcaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cacctgtggctcccacttgacttaaacaaaatctcgccaatcattctgaatgtttgcaag 331
Query: 420 ttcctgcctcattggattctcccccgtttcaaagaaaccgctatgaccaatttcattttc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttcctgcctcattggattctcccccgtttcaaagaaaccgctatgaccaatttcattttc 271
Query: 480 atctttttttttttt-----ggttttgatttttttgttttcctttgtaattttgccacac 534
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atctttttttttttttttttggttttgatttttttgttttcctttgtaattttgccacac 211
Query: 535 atgcatgtgtcttctaacaatccattgtttcattttgcttcttttgaagtttacataaac 594
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 atgcatgtgtcttcaaacaatccattgtttcattttgcttcttttgaagtttacataaac 151
Query: 595 ggagtcctggtgtatttagtctatgatctgctgcatttgcccaacatcacacatttgagg 654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 150 ggagtcctggtgtatttagtctatgatcttctgcatttgcccaacatcacacatttgagg 91
Query: 655 ttgagccacactg 667
|||||||||||||
Sbjct: 90 ttgagccacactg 78
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1076
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1066
Effective search space: 700362
Effective search space used: 700362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_e01.g1 MSMg01no162_e01.g1 CHROMAT_FILE:
MSMg01no162_e01.g1 PHD_FILE: MSMg01no162_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:34 2005
(336 letters)
>mm_chr1_73107288_73108023
Length = 736
Score = 600 bits (310), Expect = e-176
Identities = 328/334 (98%), Gaps = 3/334 (0%)
Strand = Plus / Plus
Query: 1 aggggtaggtggggattgcttagtggggaaagcacctgttgcattgctgtgaggaccaga 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aggggtaggtggggattgcttagtggggaaagcacctgttgcattggtgtgaggaccaga 260
Query: 61 gttcagatctccaagacccacgtaaagcctgatatggcagtgcacgtctgtaatccaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcagatctccaagacccacgtaaagcctgatatggcagtgcacgtctgtaatccaagc 320
Query: 121 tcgggccaatctcgggccaggtagagtggtacacacagtggtgaccaagacagtttcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcgggccaatctcgggccaggtagagtggtacacacagtggtgaccaagacagtttcaaa 380
Query: 181 caaggtggaaagccagcactgatacccaaagtcattcatttgcctttctttctccatcat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 caaggtggaaagccagcactgatacccaaagtcattcatttgcctttctttctctgtcat 440
Query: 241 atgtctttcactcccctctctctccctctctcccctctctgtgttgtgttgtgttgtgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtctttcactcccctctctctccctctctcccctctctgtgttgtgttgtgttgtgtt 500
Query: 301 gtgttgtgt-tgtgttgtgttgtgtgtgtgtgtg 333
||||||||| ||||| |||| |||||||||||||
Sbjct: 501 gtgttgtgtgtgtgt-gtgt-gtgtgtgtgtgtg 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
