BAC Information

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BAC

Clone NameMSMg01-162F02
Chromosome1 (Build37)
Map Location 188,969,818 - 188,970,142
singlet/doubletsinglet
Overlap geneSpata17
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneGpatch2, Esrrg, 9330162B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162F02.T7 (MSMg01no162_f02.b1)MSMg01-162F02.TJ (MSMg01no162_f02.g1)
ACCAG361481AG361482
length718725
length of high quality
(start - end)
329 (46 - 374)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no162_f02.b1 PHD_FILE: MSMg01no162_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:39 2005CHROMAT_FILE: MSMg01no162_f02.g1 PHD_FILE: MSMg01no162_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATGCAATATTATCACTGTTTCCCTCTGCTACTTTTGGTGATGTG
CTTTGAAAAACATGTCCTATCACCTGTATTTCTCTCTCAAGTTACTTTCT
CAAGAATCTTTTGTGATGCACACATCCTGTCAGGTGGCCTCTCATAGGGC
TTTGCTCACATGGTGGCATGTGTGTTAGGATCACTACTGGATCACCACTG
AGTTTCTTTATGACATCACACTTGTGAACAAAATGGGCCCTTCTTAATCT
CCTCCCCAATCCCACAGTCTACATTCCTAGGGCCCTCCAGGAGTTCTGAT
TGGCTAGTCTACATAATTTGTTTGCCCCACGCTTCCACAGCCATCACACA
GGGTAAGAGAGTCCTGGTTCCACTGTAAGATACAGAAGAGCCCTTGAAGC
ACAACACTTGTTTCCCAAGGACTGGGTGTGCTGTTGACTGCTGAGTAGAT
TCCCAAGGTCTATGGTAGTGGCTGTGTAGGATACCCACAGTAGGTACTAG
AGAAGCACACCTTAGTGGATGAACTCTACCATCCTGGGCTTTGGAGTTTG
ACCTGCTTGTGCCCCTTCTAACAAAATGCCAGATACTAGATAAATACACA
AGTTTCTTGGTTGCTTGGTTGGTTGGTTTTCTCACAGTTCTGTAGACTAG
GAAGCAAAGGTGCAGCAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCTCTAGGACCCACACAAAAGTCAAG
CATGGTGGCACATGCCTATAAACTCAGTGCTGGGGAGGGAGCTGGACAAT
CAGGGATCTTTCTGGCTAGTCTAGCCCAAGCAGTGAGCTTCAGGTTCAAC
AAGAGACCGCATCTTAAAAAATAAGATAGAGAGTGACTGAAGAAGACACC
CAGCATTGACCTCTAACCTAAACACACACACACACACACACTAATGGAGC
TTGCTTCATCTTGGGTGTGAGGGAAGGCAAACAGTCCTTATAGTAAGTAG
TAATCTTTGCAATATGGAAAGCACCACCCCACAACAAGGGTATGAAGTGC
CTGCAGGGAATGGGGACGTCATCTGAGAGAGGACCCTCAAGTGAGTTGCA
CGAAAAGCGACCTTCTCGACAAACTCCTGGCAGGTTGGAGGAGTGTCTTA
GTCAGGGTTTCTATTCCTGAACAAAGATCAGGAGCTCTGGGGACCACTCT
GCCTGTGGTATGTGAACAGGCGATGGAGAGAGAAGGGTAGAGAAGGATGG
GTGTTTACGCCCCCTTCCTTCTTTTTCCCTCCCTTCCCCCCCTCCCCTCC
GTTTCCGCTCCTGCGTTTTTTGCTTCCCTCCTTTTTATAATACTCCCCCC
TAATATTTTGGTAAACCAAAATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_f02.b1 MSMg01no162_f02.b1 CHROMAT_FILE:
MSMg01no162_f02.b1 PHD_FILE: MSMg01no162_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:39 2005
         (329 letters)



>mm_chr1_188969614_188970342
          Length = 729

 Score =  629 bits (325), Expect = 0.0
 Identities = 325/325 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgcaatattatcactgtttccctctgctacttttggtgatgtgctttgaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gaattctatgcaatattatcactgtttccctctgctacttttggtgatgtgctttgaaaa 470

                                                                       
Query: 65  acatgtcctatcacctgtatttctctctcaagttactttctcaagaatcttttgtgatgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 acatgtcctatcacctgtatttctctctcaagttactttctcaagaatcttttgtgatgc 410

                                                                       
Query: 125 acacatcctgtcaggtggcctctcatagggctttgctcacatggtggcatgtgtgttagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 acacatcctgtcaggtggcctctcatagggctttgctcacatggtggcatgtgtgttagg 350

                                                                       
Query: 185 atcactactggatcaccactgagtttctttatgacatcacacttgtgaacaaaatgggcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 atcactactggatcaccactgagtttctttatgacatcacacttgtgaacaaaatgggcc 290

                                                                       
Query: 245 cttcttaatctcctccccaatcccacagtctacattcctagggccctccaggagttctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cttcttaatctcctccccaatcccacagtctacattcctagggccctccaggagttctga 230

                                    
Query: 305 ttggctagtctacataatttgtttg 329
           |||||||||||||||||||||||||
Sbjct: 229 ttggctagtctacataatttgtttg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)