BAC Information

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BAC

Clone NameMSMg01-162G04
Chromosome1 (Build37)
Map Location 44,910,385 - 44,910,973
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738
Downstream geneLOC100041752, LOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162G04.T7 (MSMg01no162_g04.b1)MSMg01-162G04.TJ (MSMg01no162_g04.g1)
ACCAG361528AG361529
length716715
length of high quality
(start - end)
674 (43 - 716)589 (72 - 660)
definitionCHROMAT_FILE: MSMg01no162_g04.b1 PHD_FILE: MSMg01no162_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:44 2005CHROMAT_FILE: MSMg01no162_g04.g1 PHD_FILE: MSMg01no162_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGAGGAATACCGAATGGCTGAGAAACACCTGAAAAAAATGTTC
AGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGGGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCACTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTTCTCAGAA
AATTGGACATGGTACTACTGGAGGATCCCACAATACCACTCCTGGGCATA
TATCCCGAAGATGTTCCAACTAGCAAGAAAGAAACATGCTCCACTATGTT
CATAGCAGCCTTATTAATAATAGCCAGAAGCTGGAAAAAACCCAGATGCC
CCTCAACAGAGGAATGGATACAAAAAAAGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAATTTATGAAATACCTAGGCAAATGGTTGGAC
CTGGAGGGCATTATCCTGAGTGAGGTAACCCAATCTCAAAAGAACTCAAA
TGATATGTACTCAATGATAAGTGCATATTAGCCCAAGATATAAGTTACAA
TTTGCAAAACACATGAAACTCAAGAAGAACGAAGACCAAAGTGTGGACAC
TTTGCCCCTTCTTAAN
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTGGAAACGTATTGCCTTGGATGTTAA
TAATTGTGTTTTTATACTGATGTATTGGTATCTGAGTCTGAGATGATTAT
GATTTCAGATACTGTTTTCTAATCCTATATGTATTAGATGTGTGCTCCAT
TTCTTCATTTCTGTTGCCAAGATCTCTTTGTATCTTAGAAAAAGTGTGAT
GGCTGTGTTTGGCTTGTAGATAGTACTTCAGCAAGTTGGTAGAGACAGAG
AAGAATGGAAATAAGTTAAAAGAAAAGTCTGAGAATTTCATTCATAAAGA
GCTAAATGAGCCTACTCACAACAGAGTTGTGGTTACAGAACATTGTATTT
GTGATAGGAAGAGAATTCTATCAATAGGTTGCAGTAGGACAACAGATTGT
CTGAATAGACAATAATGAACATGCTAGGGATACCCTGTGTCTGAAGCAAG
TATTGTAGGCTCCAGTGAGTGAAGCTGAAGTAGAAGAGGGAGCACCTTCA
AGGAAATTGTTTCTAAGATGAGGTGTAGAATGGAGAGATTGTAGTGTAGT
GGACACCATTGCCTTTTTTTCTGATTTTGTTGAAATGCTTTGGGTTTCTT
TCTGTTTAGATTGATGTTGTCTGTATGCTTGTTTTACATATCCTTTATTA
TTCTGAAGGTTGCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_g04.g1 MSMg01no162_g04.g1 CHROMAT_FILE:
MSMg01no162_g04.g1 PHD_FILE: MSMg01no162_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:44 2005
         (589 letters)



>mm_chr1_44910040_44911028
          Length = 989

 Score = 1123 bits (581), Expect = 0.0
 Identities = 587/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggaaacgtattgccttggatgttaataattgtgtttttatactgatgtattggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 ttttggaaacgtattgccttggatgttaataattgtgtttttatactgatgtattggtat 875

                                                                       
Query: 61  ctgagtctgagatgattatgatttcagatactgttttctaatcctatatgtattagatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 ctgagtctgagatgattatgatttcagatactgttttctaatcctatatgtattagatgt 815

                                                                       
Query: 121 gtgctccatttcttcatttctgttgccaagatctctttgtatcttagaaaaagtgtgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gtgctccatttcttcatttctgttgccaagatctctttgtatcttagaaaaagtgtgatg 755

                                                                       
Query: 181 gctgtgtttggcttgtagatagtacttcagcaagttggtagagacagagaagaatggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gctgtgtttggcttgtagatagtacttcagcaagttggtagagacagagaagaatggaaa 695

                                                                       
Query: 241 taagttaaaagaaaagtctgagaatttcattcataaagagctaaatgagcctactcacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 taagttaaaagaaaagtctgagaatttcattcataaagagctaaatgagcctactcacaa 635

                                                                       
Query: 301 cagagttgtggttacagaacattgtatttgtgataggaagagaattctatcaataggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cagagttgtggttacagaacattgtatttgtgataggaagagaattctatcaataggttg 575

                                                                       
Query: 361 cagtaggacaacagattgtctgaatagacaataatgaacatgctagggataccctgtgtc 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cagtaggacaacaaattgtctgaatagacaataatgaacatgctagggataccctgtgtc 515

                                                                       
Query: 421 tgaagcaagtattgtaggctccagtgagtgaagctgaagtagaagagggagcaccttcaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tgaagcaagtattgtaggctccagtgagtgaagctgaagtagaagagggagcaccttcaa 455

                                                                       
Query: 481 ggaaattgtttctaagatgaggtgtagaatggagagattgtagtgtagtggacaccattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ggaaattgtttctaagatgaggtgtagaatggagagattgtagtgtagtggacaccattg 395

                                                            
Query: 541 cctttttttctgattttgttgaaatgctttgggtttctttctgtttaga 589
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctttttttctgattttgttgaaatgctttgggtttctttctgtttaga 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)