BAC Information

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BAC

Clone NameMSMg01-162G08
Chromosome1 (Build37)
Map Location 184,428,012 - 184,428,321
singlet/doubletsinglet
Overlap geneCapn2
Upstream geneCcdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2
Downstream geneLOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162G08.T7 (MSMg01no162_g08.b1)MSMg01-162G08.TJ (MSMg01no162_g08.g1)
ACCAG361536AG361537
length712709
length of high quality
(start - end)
314 (44 - 357)282 (73 - 354)
definitionCHROMAT_FILE: MSMg01no162_g08.b1 PHD_FILE: MSMg01no162_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:45 2005CHROMAT_FILE: MSMg01no162_g08.g1 PHD_FILE: MSMg01no162_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGCACATTGGAACTTAGGGAGGAAGTTCCTGGGCCCCTGGACTCAT
GCCTAGTACAAGCTCTGTGCTGTGCTGCCTCCCCCAAATCACCCTAAACA
ACGGAGCTAAGTGACGAAGTGACATGAATTAAGATGTCTAAAATGATGAG
CAAAAGAACGGGCTGTGGCATGGCTCTGCAGGCAGAGGTTCTTGCCCCTA
AGATCTGGGTTTGAGCCCCAGAACTCACAAGGCAGAAGGAGAGAACTGAC
TACTGCAGGCTGTCCTCTGACCTCCACAAGTGTGGAGGTCACACAAAAAG
AATGATTATTGGCCCCCCACCCCCACTATAAACAATCATTATGCAGTTTA
AATGTATATTCACCCCCACTATGTATACACTTATAACTACGATAAACTAT
CCATTCATCCAATTCATCCTCTTATGTATTTGGATATTTTATATTATGGT
AATATTTGACATAGTATGTGAATCCATGAAAATTCTAGAAAAAGTGGGAG
AAGTCTATTACAATCTTAGAGTGGAAATTAGCTATCTGATTGTAATTTAG
AAGTCATGAAGTTTTAAAATCACAAGTTACAATTGTTTATATATTAAATA
ATAAATTTAGCTACTTTAAAGAGATTACATGGTAAAAGTCACAATAAGCT
TAAAAGTATAAT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACACCTCTCACTTCTTCCCATACTTCC
TATCTCTACCCGGAAGTCCCGCCTTCCCTCTCCTGCCTCAGCTATAGGCT
GTCAGCTCTTTAGTAAACCAATCAGAAGATGAGGGATGTTTATAAAATAA
GAAGCAAGTGCTGAACCATTGGAATGACAATCCTAGGGTCTGGCTTGTAC
TCGGCTCTCTGCTGGTACAGATATCAATGTTTGAATAATACAAAGGCAAC
CTTTACACGATGCATTGCACAGAAAGATGATCGCAACAGACTTGAAGAAG
TCTTTTTGGGCCCCCCACGACCCATGCATAGTCACATTCACCCTGTGGCA
TCATTCTCACCCCCCACCCCGCCCCCAGGCTCCAAGAGCACCTCCTTCTC
CTCAGTGGACCTCAGGTTTACACAGCAGAGTTGGCAGGGCCCTGGGGTGA
TGCATACCTGTGGTCAGTCCGGCACTCAGGGCAAAGGCAGGAGCTTTGCC
ACAGGTTAGAGGCCAACTCCGTCTACATAGTGAGTGCTGGGCTAGACTAT
GTAGTGGGACCCTATCTTAAGCAAAGAAACGAACTAAACTGCATCTGTTT
TTAAGGAGTATGGGGGGAGGGCCTGGCTCTCACTTATCCCATACCCAGCT
GCACCTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_g08.b1 MSMg01no162_g08.b1 CHROMAT_FILE:
MSMg01no162_g08.b1 PHD_FILE: MSMg01no162_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:45 2005
         (314 letters)



>mm_chr1_184427809_184428522
          Length = 714

 Score =  538 bits (278), Expect = e-157
 Identities = 302/310 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctagcacattggaacttagggaggaagttcctgggcccctggactcatgcctag 63
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctagcactttggaacgtagggaggaagttcctgggcccctggactcatgcctag 263

                                                                       
Query: 64  tacaagctctgtgctgtgctgcctcccccaaatcaccctaaacaacggagctaagtgacg 123
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 264 tacaagctctgtgctgtgctgcctcccccaaatcaccctaaacaacagagctaagtgaca 323

                                                                       
Query: 124 aagtgacatgaattaagatgtctaaaatgatgagcaaaagaacgggctgtggcatggctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtgacatgaattaagatgtctaaaatgatgagcaaaagaacgggctgtggcatggctc 383

                                                                       
Query: 184 tgcaggcagaggttcttgcccctaagatctgggtttgagccccagaactcacaaggcaga 243
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcaggcagaggctcttggccctaagatctgggtttgagccccagaactcacaaggcaga 443

                                                                       
Query: 244 aggagagaactgactactgcaggctgtcctctgacctccacaagtgtggaggtcacacaa 303
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 444 aggagagaactgactactgcaggctgtcctctgaactccacaagtgtggaggccacacaa 503

                     
Query: 304 aaagaatgat 313
           ||||||||||
Sbjct: 504 aaagaatgat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)