BAC Information

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BAC

Clone NameMSMg01-162H20
Chromosome1 (Build37)
Map Location 105,717,260 - 105,717,583
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162H20.T7 (MSMg01no162_h20.b1)MSMg01-162H20.TJ (MSMg01no162_h20.g1)
ACCAG361601AG361602
length766718
length of high quality
(start - end)
329 (47 - 375)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no162_h20.b1 PHD_FILE: MSMg01no162_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:52 2005CHROMAT_FILE: MSMg01no162_h20.g1 PHD_FILE: MSMg01no162_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:29:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCATTCACCTGCCTTGCTTATTCTTGAAAACACTTTCTTTGT
ATTCATGCTCCTGATCTAATAGCCTTTCCTTGCCTTCTTTTGCAATGATA
CAATACCTGAAACTTTTTTGAGAAGAGAGAGGTGGTATACATCTTCCATT
TTATTCAGCTATTTTCTTGGCATTCTCTTGGAATTCATTTGGTAGCCTGT
GTTCTCTTTGATTTCTTTGAAAATATTTATGAACACTTTTAAATTATTTG
GAATTTCATATGCAATTTTATTGTGGGTCATTACTATGGGGTTCATAAGT
TTTTACAGAAGATATGTTTTGATTCCTCCCCCCCCCTTTTGTTCTGCATT
GCTTGAGCATCTGAAGTTAGCCCCCGCGAATGTATGTGTGTGTGTTTATG
TTTTGTGAGAGTATCTGGGGCGCGGGAAAACGAGCGGAAGGTAGATATTG
TCTGGTAAGACGGTAGAAAAGTTAGATTCATCCCAATAATAAACACAACT
ATAAAAAAAAGCAATTAAACAAAAAAAAACAATATAACACCAAACTACAA
CATATAAAAATAAAAAATGTGTAAATTGGGATGAATGAACGGGCCGTATA
AGTGGGAGGGGCCTGCCGCGGTTCACGGTTGGAGGACAAAGGAAAAGAAA
AAGAGTGGGTCGGTAACGTGGAAGAGAGAAGTGCCAGAAGGAAATTCCGG
TACAGAAAAGTTGTTA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGAATGTCTTTTTTTCCAGTATTTT
TTCCCTGACTAATTATTGAGTAGGGAATTGTTCATTTTCCATGAATATAT
TGGCTTTCTGTTGTTTCTGTTGTTGTTTAAGTCCAGCTTTAACACACAGA
CATCTGATAAGATGCACAGGATTATTTGAATCTTGTATGTGTTGAGGCTG
TCTTTGTGACTGAGAATGATGTCAGTTTTTGAGAAGTTTCAATGAAGATC
TGAGAAGTATATCCTTTTGTGTATGATGAAATATTCTGTAGATATCTGTT
AACTCCATTTATTTTTTTTTATCTACCCCCCCCACTATTTCTATGTTTAG
TTTCAGTTTCAATGACCTGCACCCTGCTAAAAAAGAGGTGCTAAAGACAC
CCACTATTAATATGTAGAGTTCAATGTTTAATTTAAGCTTTAGTAATGTT
TCTTTTATGATGTGAGGTACGTGTAATATCATGGGTTCTCCATGTATATT
TTGCTGGGTATAGCAATCTGGGCTGACTTCTTTGGCCTCTCAAGGCCTTC
AAGTCAACTATCCTGGTCATTTTATCTTTTAGATTCTTGGTTGAGAAAGC
TGGTATAATTTTGATAGATCTGCTTTTGTATGTTTCATGACCCTTTTTTC
TTACAACTTTTAATATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_h20.b1 MSMg01no162_h20.b1 CHROMAT_FILE:
MSMg01no162_h20.b1 PHD_FILE: MSMg01no162_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:29:52 2005
         (329 letters)



>mm_chr1_105717056_105717784
          Length = 729

 Score =  619 bits (320), Expect = 0.0
 Identities = 323/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcattcacctgccttgcttattcttgaaaacactttctttgtattcatgctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcattcacctgccttgcttattcttgaaaacactttctttgtattcatgctc 264

                                                                       
Query: 65  ctgatctaatagcctttccttgccttcttttgcaatgatacaatacctgaaacttttttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgatctaatagcctttccttgccttcttttgcaatgatacaatacctgaaacttttttg 324

                                                                       
Query: 125 agaagagagaggtggtatacatcttccattttattcagctattttcttggcattctcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agaagagagaggtggtatacatcttccattttattcagctattttcttggcattctcttg 384

                                                                       
Query: 185 gaattcatttggtagcctgtgttctctttgatttctttgaaaatatttatgaacactttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaattcatttggtagcctgtgttctctttgatttctttgaaaatatttatgaacactttt 444

                                                                       
Query: 245 aaattatttggaatttcatatgcaattttattgtgggtcattactatggggttcataagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaattatttggaatttcatatgcaattttattgtgggtcattactatggggttcataagt 504

                                   
Query: 305 ttttacagaagatatgttttgatt 328
           |||||||||||| |||||||||||
Sbjct: 505 ttttacagaagacatgttttgatt 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)