BAC Information

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BAC

Clone NameMSMg01-162K16
Chromosome1 (Build37)
Map Location 190,023,185 - 190,139,840
singlet/doubletdoublet
Overlap geneEsrrg, Ush2a
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162K16.T7 (MSMg01no162_k16.b1)MSMg01-162K16.TJ (MSMg01no162_k16.g1)
ACCAG361724AG361725
length696694
length of high quality
(start - end)
273 (424 - 696)277 (75 - 351)
definitionCHROMAT_FILE: MSMg01no162_k16.b1 PHD_FILE: MSMg01no162_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:05 2005CHROMAT_FILE: MSMg01no162_k16.g1 PHD_FILE: MSMg01no162_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,139,568 - 190,139,840)(190,023,185 - 190,023,461)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGAACAGGGTTTCGTTTGCCTGGCCCTTTAAAAATGATTCATGC
TGATCCCAAGCTGTTCTCCCCACACCAAGCCCTCCCCAACCGACCATCTT
TCTATAAATAAGATTAAATCTTTGGTTTTTGGAACCATGTTTTATGTTAC
AAGATTGTCCAAACTATTTTACAATTCTGATCTGAAGCACCATCGCAGCG
ACACCATGGAGACAATAGTGGCCTTTTGGTAATAGCTCATCCCAGGACTC
CCTCTTGCTGGTTATTGAGTGGAATAAGAATGTATACAATGGGATTTCTG
ATTTGTTTTTAGAACCCTCCCCGCCAAACCCTCCTATAGATCTCACTCTC
TGGCCCTGGGCACACAAGAGCAGCCTACACATATTAGTTGGTGTGCTTTG
AATGAGTAAATTGGCCAATCCAGCAGCATTTGAAGAGGGTTTTAAACCGA
GCCCCTTAAGGGGTCCGCAGGCACATGCAAATATGTGTGAGGCATTCTCA
AGCCTTTATTCCATGGGAGCTCCTTGTTCTATTTTAACCATTACTTAGCT
ATTCAACAATATGCCCCATAAGAGGCTAGACATATCCATTCGAGAGAAAG
GGGGTGTACATGAAGATAGTAATAGAGTTCTAGGCACTATCGTCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTAGACATCACATTCTATTGAAAGT
GCTACCATCAGTAGAGATTAAGAATTCTAGGAATACGTATGCCTAGCTGG
GACAGGAGTGGGCTAAAATAGGGGCATACTCTGGTAATTCAAAATGGTTG
GTATTTTGTTATATTTCCCCTTTGTGCCTTCTCTAAGGCTAGATTGTAGT
ATTAAGTCTCTTTTAACATTTGCATAAAGTTCAGGATAGATCCCTCCTAA
TGACGAGCTGATCATCAGATACCTGCGTGTCAATAACGGCTCTGAAACCA
TGTTCTTTTGACAGCCCCCCCCCACTCGTTCCAGCTGCTTTTGTTTTGAC
CCTATCTTTGAACTTTATCTTGATTGCTGGCCAGTAGTTTCCCCCTTAAT
TACAAGAAGGAAACTGTCAATAAAATCTGTTAAATGGGATGCAATGAGTG
GCTTGAATGGGCGGATGGCTATTTGTTCAAATTCTGCAGTATTCAAGGTA
TTGACAGTTTGTTTTCTGGGGCCATATGTGACGATCAATCTCAGGCTGGG
CTCAGCCGTGCTGAAAAATGAAAAACCAGATTGCTTTTGCTTACTTGTGG
ATGACGACTTTGTGATTTGGCGCGGTCTGGGCAAGATGAGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_k16.b1 MSMg01no162_k16.b1 CHROMAT_FILE:
MSMg01no162_k16.b1 PHD_FILE: MSMg01no162_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:05 2005
         (273 letters)



>mm_chr1_190139368_190140040
          Length = 673

 Score =  505 bits (261), Expect = e-147
 Identities = 270/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctacacatattagttggtgtgctttgaatgagtaaattggccaatccagcagcatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cctacacatattagttggtgtgctttgaatgagtaaattggccaatccagcagcatttga 414

                                                                       
Query: 61  agagggttttaaaccgagccccttaaggggtccgcaggcacatgcaaatatgtgtgaggc 120
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 413 agagggttttaaaccgacccccttaaggggtccgcaggcacatgcaaatatgtgtgagcc 354

                                                                       
Query: 121 attctcaagcctttattccatgggagctccttgttctattttaaccattacttagctatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 attctcaagcctttattccatgggagctccttgttctattttaaccattacttagctatt 294

                                                                       
Query: 181 caacaatatgccccataagaggctagacatatccattcgagagaaagggggtgtacatga 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 293 caacaatatgccccataagaggctagacatatccatttgagagaaagggggtgtacatga 234

                                            
Query: 241 agatagtaatagagttctaggcactatcgtcct 273
           |||||||||||||||||||||||||||||||||
Sbjct: 233 agatagtaatagagttctaggcactatcgtcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no162_k16.g1 MSMg01no162_k16.g1 CHROMAT_FILE:
MSMg01no162_k16.g1 PHD_FILE: MSMg01no162_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:05 2005
         (277 letters)



>mm_chr1_190022985_190023661
          Length = 677

 Score =  536 bits (277), Expect = e-157
 Identities = 277/277 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagacatcacattctattgaaagtgctaccatcagtagagattaagaattctaggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagacatcacattctattgaaagtgctaccatcagtagagattaagaattctaggaat 260

                                                                       
Query: 61  acgtatgcctagctgggacaggagtgggctaaaataggggcatactctggtaattcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtatgcctagctgggacaggagtgggctaaaataggggcatactctggtaattcaaaa 320

                                                                       
Query: 121 tggttggtattttgttatatttcccctttgtgccttctctaaggctagattgtagtatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggttggtattttgttatatttcccctttgtgccttctctaaggctagattgtagtatta 380

                                                                       
Query: 181 agtctcttttaacatttgcataaagttcaggatagatccctcctaatgacgagctgatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctcttttaacatttgcataaagttcaggatagatccctcctaatgacgagctgatca 440

                                                
Query: 241 tcagatacctgcgtgtcaataacggctctgaaaccat 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagatacctgcgtgtcaataacggctctgaaaccat 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)