Query= MSMg01no163_a15.b1 MSMg01no163_a15.b1 CHROMAT_FILE:
MSMg01no163_a15.b1 PHD_FILE: MSMg01no163_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:32 2005
(319 letters)
>mm_chr1_62529301_62530019
Length = 719
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Plus
Query: 4 ggaattccttttctaatcaatagaaacccacgacatgtggaaacggagaattgtaatact 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttttctaatcaatagaaacccacgacatgtggaaacggagaattgtaatact 263
Query: 64 ctgtaattagaagtgaaagcttctttcccttgtttaggctacacataaaaggcctcctaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgtaattagaagtgaaagcttctttcccttgtttaggctacacataaaaggcctcctaa 323
Query: 124 agcaggtgagagtggagatggctctggaaggctccttaaacattgattaggtacaataag 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcaggtgagagtggagctggctctggaaggctccttaaacattgattaggtacaataag 383
Query: 184 atacctcttttctcttacaaaatagttatgtaagaaggtcaagttgctagacagagcatg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atacctcttttctcttacaaaatagttatgtaagaaggtcaagttgctagacagagcatg 443
Query: 244 catttgaggaagttgagaaatacccagaacatgcatgtaagcaggaaggaaagtggcagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catttgaggaagttgagaaatacccagaacatgcatgtaagcaggaaggaaagtggcagg 503
Query: 304 aagtgagact 313
||||||||||
Sbjct: 504 aagtgagact 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_a15.g1 MSMg01no163_a15.g1 CHROMAT_FILE:
MSMg01no163_a15.g1 PHD_FILE: MSMg01no163_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:32 2005
(338 letters)
>mm_chr1_62686619_62687358
Length = 740
Score = 615 bits (318), Expect = e-180
Identities = 334/340 (98%), Gaps = 2/340 (0%)
Strand = Plus / Minus
Query: 1 gccttggaggggagacagttggagggatgttacacacccattgataaagcttactgcccc 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 540 gccttggaggggagacagttggagggatgttacacaggcattgataaagcttactgcccc 481
Query: 61 agcttttcttaaccattgcttggcttgctgtagcctctgtcacagatataatgttagttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agcttttcttaaccattgcttggcttgctgtagcctctgtcacagatataatgttagttc 421
Query: 121 tttagggcagaatcagatgcagtgagtgctatactttaagcaagaacagaaagctgttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tttagggcagaatcagatgcagtgagtgctatactttaagcaagaacagaaagctgttgt 361
Query: 181 cta--tttttttgttctctttaataatacctttggacttctgtgtgcttctcaggattag 238
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 360 ctatttttttttgttctctttaataatacctttggacttttgtgtgcttctcaggattag 301
Query: 239 caacgattgtgttgactgtgtacaacacaaagccaaggtctggagaagcttttctgtagc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caacgattgtgttgactgtgtacaacacaaagccaaggtctggagaagcttttctgtagc 241
Query: 299 ctttgtgtaggggtgatgtgcacctagggcgaacatgctg 338
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 240 ctttgtgtaggggtgctgtgcacctagggcgaacatgctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 740
Length adjustment: 9
Effective length of query: 329
Effective length of database: 731
Effective search space: 240499
Effective search space used: 240499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
