ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCCGG
AATTCCATCAATTAATTGTACTAGAGGTATATCAACCATATGCCACAGCA
TAAATCATACCCAAAAGGAGTTGGCCAAGACAAAAGAAATCCTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCTTTCCCCCCNCCA
AAACTCCCTCCTTAACCTCAAAATCCCCCCTATATTCCCATCCCCTCCAC
CCCCTCCCCCCCACTCCTATCCCCCCCACCCCATCCACTCCCTCACCCCC
CCCACCCCCCCACCTTTTTTTTTTTTTCTCACCCTCCCCTCACCCCTNNA
ANNACATTTTTTTTTTTCCCCCCATCTCCCCCCCCAAANNNNTTTTTTTT
TTCTTTTATCCTCTCCCCCCCCCCCCTCTAAAAAAAAAAAATCACCCTCC
CCCCCGCTGTCTCCATCACCTTTCCCATTTTACCCCTTATCCCCATCCCA
CTCTACCTATCCCTTCTACCCTCTACCTACCCCCTTTCTCTCCCTTCTCC
TTTCCTCCTCTATCACTCACCCTTTATTCTTCCTTCACCTTTCCCCATAC
TTCCTTCCATCTTAACATCCTCCCTCTCTCCCTATTGCACCATCCTTCAT
CCTCCCCTACCCTTTACCTTTAATTTATACTCCTCATCCCCCTCCCTCTC
TTCCTCCCTCCTTCCCTCCTTACATAACCATTCCCTCCCCTCTCTCCCAC
TCCTATTTCCTACAACCCTTCCCCCTCCCCCCAACCTACTTTTATCTCCC
TCCCCTCAATCTCCATATTCCACACCCCCTTCTTCTTTTTCATCCCTTCT
CTCCATTCTCCC

ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAAAAAATAAAATATACTTGAACAGTT
GACAGAATATTAAAATACATCTGCAAAAGTGTGAGGGATTTATATTTGTA
ATTTGTATTAGACGATATTTTTCACAGGTGGAATTAAAACACATTTGCAA
ATTCATAGGCAATAACATGCTTAAAATGCATTTGTTTCATTAAGAACATT
ACAAAATTTATAAATAATTTAGAAGATTTTTAAATCATTTCCATCATTTC
ATTTGCAACACATTAGTACATTGGCATTTAAAATGCCTTAAATATTGTAT
CCCGTAGTGGTTATATATGCATGCATTTACTGCTTTCACCTAGTGAGTGA
GATCCAAAATATCATATTTATGTAAAATTTATTTCTCTCCATTTTATCTT
ATCTGTTTCTTCAACACTAACATTTGAATAACTGTGCACAGTTATTTTTT
GTTTTTTTGGGTTTTTTTTTGTGAGGTTGTATTTATAATAAGTAATTAAG
AATCACACAGCTGGGTTCTTTTTCATCTGTATCTGGAAACCTTTTTGGAT
AACTGTGTTCCTGACTACAAAATTCAGACAATTATAGGCATTACCCAAAG
TTGTTCTGAATATTAGTGTAAATAATTAACATTAAAAAAATTGTGAAAAA
AATGTGAACTTGTGCATAAGTACTGAAAAGTAGGAATTAGATTAATTG

Query= MSMg01no163_b06.g1 MSMg01no163_b06.g1 CHROMAT_FILE:
MSMg01no163_b06.g1 PHD_FILE: MSMg01no163_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:35 2005
         (633 letters)



>mm_chr1_150626086_150627132
          Length = 1047

 Score = 1089 bits (563), Expect = 0.0
 Identities = 621/651 (95%), Gaps = 22/651 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaaaaaataaaatatacttgaacagttgacagaatattaaaatacatctgcaaaagtgt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaaaataaaatatacttgaacagtggacagaatattaaaatacatctgcaaaagtgt 260

                                                                       
Query: 61  gagggatttatatttgtaatttgtattagacgatatttttcacaggtggaattaaaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggatttatatttgtaatttgtattagacgatatttttcacaggtggaattaaaacac 320

                                                                       
Query: 121 atttgcaaattcataggcaataacatgcttaaaatgcatttgtttcattaagaacat-ta 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 321 atttgcaaattcataggcaataacatgcttaaaatgcatttgtttcattaagaacatct- 379

                                                                       
Query: 180 caaaatttataaataatttagaagatttttaaatcatttccatcatttcatttgcaacac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaaatttataaataatttagaagatttttaaatcatttccatcatttcatttgcaacac 439

                                                                       
Query: 240 attagtacattggcatttaaaatgccttaaatattgtatcccgtagtggttatatatgca 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 440 attagtacattggcatttaaaatgccttaaatattgtatccggtagtggctatatatgca 499

                                                                       
Query: 300 tgcatttactgctttcacctagtgagtgagatccaaaatatcatatttatgtaaaattta 359
           || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 tgtatttactgctttcacctagtgagtgaaatccaaaatatcatatttatgtaaaattta 559

                                                                       
Query: 360 tttctctccattttat------cttatctgtttcttcaacactaacatttgaataactgt 413
           ||||||||||||||||      |||||||||||||||||||||||||||| |||||||||
Sbjct: 560 tttctctccattttatttttatcttatctgtttcttcaacactaacattttaataactgt 619

                                                                       
Query: 414 gcacagttatttttt---gtttttttgggttttttttt--------gtgaggttgtattt 462
           |||||||||||||||   ||||||||   |||||||||        ||||||||||||||
Sbjct: 620 gcacagttattttttttggttttttt---ttttttttttttttttggtgaggttgtattt 676

                                                                       
Query: 463 ataataagtaattaagaatcacacagctgggttctttttcatctgtatctggaaaccttt 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ataataagtaattaagaatcacacagctgggttctttttcatctgtatctggaaaccttt 736

                                                                       
Query: 523 ttggataactgtgttcctgactacaaaattcagacaattataggcattacccaaagttgt 582
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 737 ctggataactgtgttcctgactacaaaattcggacaattataggcattacccaaagttgt 796

                                                              
Query: 583 tctgaatattagtgtaaataattaacattaaaaaaattgtgaaaaaaatgt 633
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tctgaatattagtgtaaataattaacattaaaaaaattgtgaaaaaaatgt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1047
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1037
Effective search space:   646051
Effective search space used:   646051
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)