BAC Information

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BAC

Clone NameMSMg01-163C16
Chromosome1 (Build37)
Map Location 176,951,272 - 176,951,592
singlet/doubletsinglet
Overlap genenone
Upstream geneIfi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2, Grem2
Downstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, Pld5, B020018G12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163C16.T7 (MSMg01no163_c16.b1)MSMg01-163C16.TJ (MSMg01no163_c16.g1)
ACCAG362061AG362062
length712719
length of high quality
(start - end)
322 (45 - 366)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no163_c16.b1 PHD_FILE: MSMg01no163_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:42 2005CHROMAT_FILE: MSMg01no163_c16.g1 PHD_FILE: MSMg01no163_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAACTAAATGAATTATTGTTGGCACTGCAGAGATAAATGACTGC
TAAGAAGGTCTGTACCCTGTATGAATATATATATATATATATATATATAT
ATATATATATATATATATATATATACATACATACACACACACATATATAT
ATATACATACATACACATATATACACACATATATGTGTGTGTATATGTAT
ATGCTTTGACTATTTGCTTCCTCATTATCTTCTCTTCCTCTTACCTCTGT
GCTACTTTCACTGGACCCCTTCTTCTTCCCAAATATTCTGTTTCCTACTT
TTGTGTCTTTTTGTCCCCCNGCGGACCGCTCCATTTAATGAGGATTGCTT
GCATGAATTCCCCCCGCGAGATACTATATTGAACAAGGCCAGCTTACTAG
TCACAATGCCATAGAGGATTATGACTCCTTTCTCCCAAAAACCATTAACT
CTCCCTAGTTCCCCAGGGAGAGGTAAATCTTATGAGCTTCTTCCCTATCC
ATGATGAAATATTGATGGACCTTATTGTCTACAGGACTTATGTAATTACT
CCTTGCTGATGTAATTTCATAGATATGAGCAGTCGCGGCATATTGAGAAA
ATGACATTTCATAGCACCCCTTCCCACCCTCCAGCTTTTACATTCTTTCC
TTCACCTGCCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAG
AGTACCAGTGAGTACAGCTTTACGAGGTAAGTCTGATCTTGAACTTTCTA
AGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAAAATGGCTTTGCAA
GGTATATTTGGCCTTGAATTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCT
TTTCACATGTTATCAAGTGATTAAGATAGGGCTGAAAATTCTAGAGGAAA
TTCAGGACAAGCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAG
AGAAAATATGGTATTTTAATACCCCCCCACCCCTTTCCAAGGGTCTTGAA
CCCGAGGAAAAGTTAAGGCTAGGTAGGAATACCTGGAGAGAGATTAGAAG
AAAAAGAGGAAAAAGGGAAAAGAAGAAAGATCAATTAGCGGAGGTCTCTA
GGAAAAGGAGCCTGTGCTCATCGCTGGATGGGCTCGGGGAGCCAGCTCTT
AGTAGCTCTGAAGCAGGTGAAGAATCCTCCTCTGAGGAAACAGACTGGGA
GGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGC
TAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCT
GATTGGCCTCAGGGCAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_c16.b1 MSMg01no163_c16.b1 CHROMAT_FILE:
MSMg01no163_c16.b1 PHD_FILE: MSMg01no163_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:42 2005
         (322 letters)



>mm_chr1_176951073_176951794
          Length = 722

 Score =  594 bits (307), Expect = e-174
 Identities = 316/321 (98%), Gaps = 5/321 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaa-caactaaatgaattattgttggcactgcagagataaatgactgctaagaag 63
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcaaacaactaaatgaattattgttggcactgcagagataaatgactgctaagaag 259

                                                                       
Query: 64  gtctgtaccctgtatgaatatatatatatatatatatatatatatatatatatatatata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtctgtaccctgtatgaatatatatatatatatatatatatatatatatatatatatata 319

                                                                       
Query: 124 tatatata----catacatacacacacacatatatatatatacatacatacacatatata 179
           ||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatatatatatacatacatacacacacacatatatatatatacatacatacacatatata 379

                                                                       
Query: 180 cacacatatatgtgtgtgtatatgtatatgctttgactatttgcttcctcattatcttct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cacacatatatgtgtgtgtatatgtatatgctttgactatttgcttcctcattatcttct 439

                                                                       
Query: 240 cttcctcttacctctgtgctactttcactggaccccttcttcttcccaaatattctgttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttcctcttacctctgtgctactttcactggaccccttcttcttcccaaatattctgttt 499

                                
Query: 300 cctacttttgtgtctttttgt 320
           |||||||||||||||||||||
Sbjct: 500 cctacttttgtgtctttttgt 520



 Score =  108 bits (56), Expect = 3e-28
 Identities = 65/68 (95%)
 Strand = Plus / Minus

                                                                       
Query: 74  tgtatgaatatatatatatatatatatatatatatatatatatatatatatatatataca 133
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 337 tgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatata 278

                   
Query: 134 tacataca 141
           | ||||||
Sbjct: 277 ttcataca 270



 Score = 97.4 bits (50), Expect = 1e-24
 Identities = 56/58 (96%)
 Strand = Plus / Minus

                                                                     
Query: 74  tgtatgaatatatatatatatatatatatatatatatatatatatatatatatatata 131
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatata 284



 Score = 74.2 bits (38), Expect = 1e-17
 Identities = 59/72 (81%), Gaps = 10/72 (13%)
 Strand = Plus / Minus

                                                                       
Query: 96  tatatatatatatatatatatatatatatatatatacatacatacacacacacatatata 155
           |||||||||||||||||||||||||||||||||||| ||| |||          ||||||
Sbjct: 331 tatatatatatatatatatatatatatatatatatatatatata----------tatata 282

                       
Query: 156 tatatacataca 167
           ||||| ||||||
Sbjct: 281 tatattcataca 270


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 122
Number of extensions: 51
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 9
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)