BAC Information

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BAC

Clone NameMSMg01-163D05
Chromosome1 (Build37)
Map Location 102,630,892 - 102,631,171
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163D05.T7 (MSMg01no163_d05.b1)MSMg01-163D05.TJ (MSMg01no163_d05.g1)
ACCAG362085AG362086
length722726
length of high quality
(start - end)
670 (53 - 722)280 (82 - 361)
definitionCHROMAT_FILE: MSMg01no163_d05.b1 PHD_FILE: MSMg01no163_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:45 2005CHROMAT_FILE: MSMg01no163_d05.g1 PHD_FILE: MSMg01no163_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGTTTAGCTCTACATCCCATTTTTAATAGGGTTATT
TTTGTGTTCTTAAGATCTGTATTATACCAACTTTAAGTCTCTGAAGAAAG
AAATCAAAGAAGTTCTCAGAAAGATCTCTTATGTTCATGGATTGGCAGGA
TTAATATATTAAAAACTTTATCTTGCCAAAAACAATCTACAGATTCAATT
CAGTCCCCATCAAAATTCCAACTCAATTCTTCACTGAGTTAGAAAGGGCG
ATTTGCAAATTCATCTGGAATAACAAATACCTAGGATAGTAAAAACAATT
CTCAACAATAAAAGAACCTCTGGTGGAATTACCATCCCTGGCCTCAAGCT
GTACTACAGAGCAATTGTGATAAAACAAAACAAAACAAAAACAAAACAAA
ACAAAAAATAAAAAAACAAAAACAACAACAACAACAACAAAAAAAAAAAA
CTGCATGATAGTGGTTGAGCAACAGACAGGTAGATCATTGAACTAGAACT
AAAGACCCAGAAATGAACCCACACACCTATGATCACTTGATCTTTGACAA
AGGATTTCAAACCATCCAGTGGAAAAAAAGACAGCATTTTCAACAAATGG
TGCTGGCTTAACTGGCATTTGTCATGTAGATGAAGAGGAATTGATCCATT
CTTATCTACTTGTACAAAGATC
NCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGGCCTGTATCC
CATTTTTCATAGTGTTATTTCTAATATCTGTTGGGATAGGGGTTCTCTAT
AACTTAATGCATTAACTTTCTGTCTCTTACTTTCTTGCATTTAAGATTAA
GGCCTAAATTTCTTTATTCCCCCATTCATGTTTAAAAGCATTTAAAGCAA
TTACCATTTTTTTCCTTCTATGCTTGAACAGATAGCATTTTCTTGACTTG
TATTTTTCCCTGCTAAGGAAATTAATATCTCTTAATTATTATTTGTTGAG
ATAGTATTTCTCTTTATTTCCCCGCCTCCCGCCCCCTCCATTTGAGATAA
ATTCCCTAATCTCCCCTAAAACGGCCATACAACTCCAGTAAGTTATATGT
TTTCTTGACCACATAGAAAATGGCAATGTCAGAAAACATTACATTGCTTT
AACCAATACACACAGCAAGACACTGAACCATTCCTACAGTCCCAACAAGT
GGCACAAGTGATAGAGGAAACTAATACAGTCTCAAACAATAACCAAAAAA
AAAAAACCCAAAAAACAAAAACAAAAACAAACAAAAAGCATATCCCTTAA
CAGTAAAAGTAAAAAAAAAATTAATAATATTTGAGCTGACAACACATCCA
TAAATTTCCAACTGGAACTATAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_d05.g1 MSMg01no163_d05.g1 CHROMAT_FILE:
MSMg01no163_d05.g1 PHD_FILE: MSMg01no163_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:45 2005
         (280 letters)



>mm_chr1_102630692_102631371
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttaggcctgtatcccatttttcatagtgttatttctaatatctgttgggataggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttgtttaggcctgtatcccatttttcatagtgttatttctaatatctgttgggataggg 421

                                                                       
Query: 61  gttctctataacttaatgcattaactttctgtctcttactttcttgcatttaagattaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gttctctataacttaatgcattaactttctgtctcttactttcttgcatttaagattaag 361

                                                                       
Query: 121 gcctaaatttctttattcccccattcatgtttaaaagcatttaaagcaattaccattttt 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 360 gcctaaatttctttattcccccatgcatgtttaaaagcatttaaagcaattaccattttt 301

                                                                       
Query: 181 ttccttctatgcttgaacagatagcattttcttgacttgtatttttccctgctaaggaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttccttctatgcttgaacagatagcattttcttgacttgtatttttccctgctaaggaaa 241

                                                   
Query: 241 ttaatatctcttaattattatttgttgagatagtatttct 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttaatatctcttaattattatttgttgagatagtatttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)