ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGATAGGTAAAGATCCTTTCCCAGTCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGAATTTTCTCTCTTGTCCATTAAANCTTCAAGGCTTTTCCCT
TTTTTCTCCTCTATAAGCCTCACCCGCCTCTGGTTTTATGTGAAGTTCCT
GGCTCCNNNTACACCACTAAAGNNNNNNNGAGATTAGTATGGATCAATTT
TNATTCTTCTACACGAAAACAACCAGTTGTGCCCGCACCAATTGTTTGAA
AATGCTTGTTTTTTGTTTCTTTTTNNNNNTTNNNTNNCCTTTGCTCAAAA
TTTAAAGGCCACAATGGGGGGGGGGGGTCTTTTTCTGGTCCCCTATTTTT
ATTTTTTTTTTTCCTATTTTTTCGGCCTTTTTCTACACCGCTGTTTTTTT
TATTTGGTAATGTCATCGTTTTTTATAATTCCTTGTCCCTTCCTTTATCC
CTCTCCTCCCCTTTTTTTCCTTTTTCT

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGAGGAAAGCTCTCCAAAGTTTGAAA
TATTTTTTCCTTAACTGTTTGCAACTTTTTATATTAAGATTCAATAGAAG
GTAGCCTGTCAGGAAAGAACAATATGAATATTCTGAATGTGGTAAATAAC
TCAGGATTCTTTCATCTGGCCCATAGCTATCCTGCAAATATTAAAGTTGC
AAAATGGGAAAGGGGCCAAGAGTGAGCTCTTAGTGCCCTCAACCCCTTTA
AATATTTCTTGATTCTTGGAATTATTAATGCAGACCCTGGGCACAAGTCC
ACAGATGACCTAGAATACTCTATTGTTTCCCTCTATTTCAATGCAAAATA
CCAGAGCCATGCCTTTGGCAAGAGATTTAAGAAGGTAATGCCATATAGAT
ACTTCACTATTCAAGACCGAGTTCAAAGTCAAAACATTATTTGAACATAG
ATTTTTAAACTTCCTAATGAACACAGAATGAAATACAAAAAAAAAAACCT
TGAAGTGTAAATATATTTTCTTGAGCTTTCTACACAACTTTTAAGGCTGT
AAGTAGAATAGCGCCCCTTCCCCAACACTGGAAAAATGTGACACCCTGGA
AAAACAACTCCTTACAGCATATGCCTTAGTTATTTCACCTGTGGCCATCG
AAGACACTGGGCAGTAAGCTTGCCCAATGC

Query= MSMg01no163_g17.g1 MSMg01no163_g17.g1 CHROMAT_FILE:
MSMg01no163_g17.g1 PHD_FILE: MSMg01no163_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:01 2005
         (657 letters)



>mm_chr1_47966443_47967505
          Length = 1063

 Score = 1125 bits (582), Expect = 0.0
 Identities = 641/664 (96%), Gaps = 8/664 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaggaaagctctccaaagtttgaaatattttttccttaactgtttgcaactttttata 60
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 863 aggaggaaagctctccaaagtttggaata-tttttccttaactgtttgcaactttttata 805

                                                                       
Query: 61  ttaagattcaatagaaggtagcctgtcaggaaagaacaatatgaatattctgaatgtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 804 ttaagattcaatagaaggtagcctgtcaggaaagaacaatatgaatactctgaatgtggt 745

                                                                       
Query: 121 aaataactcaggattctttcatctggcccatagctatcctgcaaatattaaagttgcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 744 aaataactcaggattctttcatctggcccatagctatcctgcaaatattaaggttgcaaa 685

                                                                       
Query: 181 atgggaaaggggccaagagtgagctcttagtgccctcaacccctttaaatatttcttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atgggaaaggggccaagagtgagctcttagtgccctcaacccctttaaatatttcttgat 625

                                                                       
Query: 241 tcttggaattattaatgcagaccctgggcacaagtccacagatgacctagaatactctat 300
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 624 tcttggaattattaatgcagactctgggcacaagtccacagataacctagaatactctat 565

                                                                       
Query: 301 tgtttccctctatttcaatgcaaaataccagagccatgcctttggcaagagatttaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtttccctctatttcaatgcaaaataccagagccatgcctttggcaagagatttaagaa 505

                                                                       
Query: 361 ggtaatgccatatagatacttcactattcaagaccgagttcaaagtcaaaacattatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtaatgccatatagatacttcactattcaagaccgagttcaaagtcaaaacattatttg 445

                                                                       
Query: 421 aacatagatttttaaacttcctaatga--acacagaatgaaatacaaaaaaaaaaac--- 475
           |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||   
Sbjct: 444 aacatagatttttaaacttcctaatgaacacacagaatgaaatacaaaaaaaaaaacaaa 385

                                                                       
Query: 476 --cttgaagtgtaaatatattttcttgagctttctacacaacttttaaggctgtaagtag 533
             ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 aacttgaagtgtatatatattttcttgagctttctacacaactttaaaggctgtaagtag 325

                                                                       
Query: 534 aatagcgccccttccccaacactggaaaaatgtgacaccctggaaaaacaactccttaca 593
            |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 324 gatagcgccacttccccaacactggaaaaatgtgacaccctggaaatagaactccttaca 265

                                                                       
Query: 594 gcatatgccttagttatttcacctgtggccatcgaagacactgggcagtaagcttgccca 653
           ||| |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 264 gcagatgccttactcatttcacctgtggccatcgaagacactgggcagtaagcttcccca 205

               
Query: 654 atgc 657
           ||||
Sbjct: 204 atgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1063
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1053
Effective search space:   681291
Effective search space used:   681291
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)