BAC Information

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BAC

Clone NameMSMg01-163I09
Chromosome1 (Build37)
Map Location 63,920,624 - 64,075,412
singlet/doubletdoublet
Overlap geneLOC671842, OTTMUSG00000013918
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik
Downstream geneKlf7, Ppia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163I09.T7 (MSMg01no163_i09.b1)MSMg01-163I09.TJ (MSMg01no163_i09.g1)
ACCAG362300AG362301
length726727
length of high quality
(start - end)
315 (45 - 359)282 (75 - 356)
definitionCHROMAT_FILE: MSMg01no163_i09.b1 PHD_FILE: MSMg01no163_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:08 2005CHROMAT_FILE: MSMg01no163_i09.g1 PHD_FILE: MSMg01no163_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,920,624 - 63,920,933)(64,075,131 - 64,075,412)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCATCATCAACACTGCCTTTAATGATGGGGAAACTCATTAGAAAA
TGCTGCCAGAGGTCTCCAGGCAAACACATCAGAAGTGAAGAACGAGTCAG
GCATGATGTGCGGCCTCAACATGGAAGGAACATTTTGTTTCCAACTAATA
GTATGATGTTAGCATGGAGTTTATTTGATACCAGTCATTGCTTGCCTAAC
TAAGTTGTACCTCTGAGAGGAAACATGTGGGACTGAGCAAAGCTTACCAA
CCATGTTAGAAGTCTTTAAGATTTAGCTTAGAGAATCCCTCCTTGTAAAG
TTAAAAACTTTTTTTGCCCCCCCCCCCCTCATCAATTATGTGGATCCCTG
ACCATGAATTTTCCCCCACATTTATACAGGTTCTTCTGGCATTGGGCACC
CCAGCATCGTGATACAGAGATGGAGTCCCATATAGCAGTAGCCTTCATAA
CAACTGCCGCTTGAAGAAGGACCACTGTGAAGCTAGTCTTTACTCAGTCT
TAAAGCTTGATTGATCCCACAGAGAGAGAGCAGGGCTGATTAGTTAATGA
GCGTAATATTTCTGGTGATATCTAATAAATGCCATGACGGAATCTATGAG
ATTGGCTTTCTGCATACAGGCATAAACATGAAAGTCCGAGTACTTTGTAG
AACCCCCTGTCTTTTTGTCTTTCAGC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAGAAGGAAGAGCCTACTACTAACA
TTGATTCAGTGCTGGACTTTTGAAAGGTGCATCAAGGTAGGCAAGAACGC
AGAGGATGCAGTATCCCTAAACCCACTGGTCTCCCGGCGTCAGCAGTATT
ATTAACTGTAAGCAATAATAAATACTGTCCCAAGGCACACAAAGCTCCTG
GAGGTTTCTTATGCTCCTGGGTCTCTAAAATGGATATGATGGCTAAAACC
CTCTATCCCTAGTCACATAAACCTGAAGGAAAACATCAATAAGTGTTCAC
ATTAGAAATTAGTGCTACCCCCCCCGCCCCTGCTACAAGAAACGGGAGGA
GTGGGCTGGTATCTCCCAAGAGATAAATGAGTGATACTGTTTTTTTTCAC
TTCAAAGCCCAGTGAGGGAAACAGAAGGTGCTTGGAACCAGAGAAATGCT
TTTGAAAGTTTAATTCTCAGATACCACCTCTAAGCAGGTGAGTAGTTCAG
ATGTAGGGTGAGAGGCAGCAACTTGACCAGTGAGGGAAGACACAGCAGGA
GAGCTGTGGAATTCCTTAGCCCCCAGCTTTTCATCAGCTTCAGCAGATGA
GCAACTGAATTCTCATAATTCAAATCACCCTCTGGGAGCTTCTCTGAGTA
AGAAGGCGAAAGATAGCTCTGCAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_i09.b1 MSMg01no163_i09.b1 CHROMAT_FILE:
MSMg01no163_i09.b1 PHD_FILE: MSMg01no163_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:08 2005
         (315 letters)



>mm_chr1_63920420_63921134
          Length = 715

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccatcatcaacactgcctttaatgatggggaaactcattagaaaatgctgcca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatcatcaacactgcctttaatgatggggaaactcattagaaaatgctgcca 264

                                                                       
Query: 65  gaggtctccaggcaaacacatcagaagtgaagaacgagtcaggcatgatgtgcggcctca 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggtctccagggaaacacatcagaagtgaagaacgagtcaggcatgatgtgcggcctca 324

                                                                       
Query: 125 acatggaaggaacattttgtttccaactaatagtatgatgttagcatggagtttatttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatggaaggaacattttgtttccaactaatagtatgatgttagcatggagtttatttga 384

                                                                       
Query: 185 taccagtcattgcttgcctaactaagttgtacctctgagaggaaacatgtgggactgagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taccagtcattgcttgcctaactaagttgtacctctgagaggaaacatgtgggactgagc 444

                                                                       
Query: 245 aaagcttaccaaccatgttagaagtctttaagatttagcttagagaatccctccttgtaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagcttaccaaccatgttagaagtctttaagatttagcttagagaatccctccttgtaa 504

                     
Query: 305 agttaaaaac 314
           ||||||||||
Sbjct: 505 agttaaaaac 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no163_i09.g1 MSMg01no163_i09.g1 CHROMAT_FILE:
MSMg01no163_i09.g1 PHD_FILE: MSMg01no163_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:08 2005
         (282 letters)



>mm_chr1_64074931_64075612
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaaggaagagcctactactaacattgattcagtgctggacttttgaaaggtgcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttagaaggaagagcctactactaacattgattcagtgctggacttttgaaaggtgcatca 423

                                                                       
Query: 61  aggtaggcaagaacgcagaggatgcagtatccctaaacccactggtctcccggcgtcagc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aggtaggcaagaatgcagaggatgcagtatccctaaacccactggtctcccggcgtcagc 363

                                                                       
Query: 121 agtattattaactgtaagcaataataaatactgtcccaaggcacacaaagctcctggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtattattaactgtaagcaataataaatactgtcccaaggcacacaaagctcctggagg 303

                                                                       
Query: 181 tttcttatgctcctgggtctctaaaatggatatgatggctaaaaccctctatccctagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttcttatgctcctgggtctctaaaatggatatgatggctaaaaccctctatccctagtc 243

                                                     
Query: 241 acataaacctgaaggaaaacatcaataagtgttcacattaga 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acataaacctgaaggaaaacatcaataagtgttcacattaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)