Query= MSMg01no163_l01.b1 MSMg01no163_l01.b1 CHROMAT_FILE:
MSMg01no163_l01.b1 PHD_FILE: MSMg01no163_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:20 2005
(313 letters)
>mm_chr1_195231915_195232627
Length = 713
Score = 578 bits (299), Expect = e-169
Identities = 305/307 (99%)
Strand = Plus / Minus
Query: 5 gaattcacttagtggaaaaatgctgaggtgctctgtgtgatgctggccagaaaggccaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaattcacttagtggaaaaatgctgaggtgctctgtgtgatgctggccagaaaggccaag 363
Query: 65 aagacaggtaatagtgaggacccagacgggacttggatgcaccccacctctgcctcacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aagacaggtaatagtgaggacccagacgggacttggatgcaccccacctctgcctcacac 303
Query: 125 tgctcatgtagcccggcgccaccctgcctttctgatagttctgttttgcttgccttgact 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tgctcatgtagcccggcgccaccctgcctttctgatagttctgttttgcttgccttgact 243
Query: 185 tagcctgtcttggttttctttcaaaaatagaacaatccaaacaagttgccaggtagccca 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tagactgtcttggttttctttcaaaaatagaacaatccaaacaagttgccaggtagccca 183
Query: 245 ggctagcctcaaaacacaaggctgtccttgaactactgattctcttgcttctggcgcctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 182 ggctagcctcaaaacacaaggctgtccttgaactactgattctcttgcttctggctcctg 123
Query: 305 ggttaga 311
|||||||
Sbjct: 122 ggttaga 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no163_l01.g1 MSMg01no163_l01.g1 CHROMAT_FILE:
MSMg01no163_l01.g1 PHD_FILE: MSMg01no163_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:20 2005
(638 letters)
>mm_chr1_195085093_195086133
Length = 1041
Score = 1064 bits (550), Expect = 0.0
Identities = 618/642 (96%), Gaps = 4/642 (0%)
Strand = Plus / Plus
Query: 1 tttgtttagctctaaaccccacttttaatggggttacttgattttctggagtccagcttc 60
||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 200 tttgtttagctctaaaccccatttttaatggggttatttgaatttctggagtccagcttt 259
Query: 61 ttaagctctttgtatatattggatattagtccctaga-tttttttaaaatgacactttat 119
|| ||||||||||||||||||||||||||||||| || ||||||| ||| ||||||| ||
Sbjct: 260 ttgagctctttgtatatattggatattagtccctggatttttttttaaacgacacttcat 319
Query: 120 ttggtgtcttccaggccctaatgctacaccttcacagtctccatgggattatcaatcagc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttggtgtcttccaggccctaatgctacaccttcacagtctccatgggattatcaatcagc 379
Query: 180 gtttgagtcattagggtgagccgaggtggtaccagggctgtggttccctttcttctcttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttgagtcattagggtgagccgaggtggtaccagggctgtggttccctttcttctcttg 439
Query: 240 tgtcctttgcctctcctcgagagttaataaacatctccattcttattctttgccctctga 299
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 440 tgtcctttgcctctcctcgagagttaataaacatctccatttttattctttgccttctga 499
Query: 300 gctgcttatgttctccagaacttctggtaagaaacacaaaccaagcaaacaggtcccatg 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttgcttatgttctccagaacttctggtaagaaacacaaaccaagcaaacaggtcccatg 559
Query: 360 tgctgggtagtaagcctgctttcatctcttccagtttggacagagctttgccgtttggtg 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 tgctgggtagtaagcctgctttcatctcttccagcttggacagagctttgccgtttggtg 619
Query: 420 gtgcagaaagctccctttgcagttaactggggatctccattttcatctttcttggtgtac 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgcaggaagctccctttgcagttaactggggatctccattttcatctttcttggtgtac 679
Query: 480 ctacccaggaacgccaatggatttttttttt---atgtaaaaagtactctgaagggggga 536
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 680 ctacccaggaacgccaatggatttttttttttttatgtaataagtactctgaagggggga 739
Query: 537 gtagtagtttacattttaacgttgctgtgtggcgtgactccatcaggcctcggccagtat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtagtagtttacattttaacgttgctgtgtggcgtgactccatcaggcctcggccagtgc 799
Query: 597 ggcggccgttatcatcattgtgtcctaaccccctctttctat 638
|||||||||||||||||| ||| |||||| ||||||||||||
Sbjct: 800 ggcggccgttatcatcatcgtgccctaactccctctttctat 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1041
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1031
Effective search space: 647468
Effective search space used: 647468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
