CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCGCTCCTCCAGCACTATGTCTGCCAGCAAACTGTCATGCT
TCCTGCCATGATGATAATGGACTGAATCCCTGAAACTGTAAGCCAGTCTC
AATTAAATGTTTTATGTATAAAAGTTGCCTTGGTCATGGTGTCTCTTCAC
AGCAATAAAACCCAAACTAAAACACGGGTAAAATACCCACACACAATAAA
ACATAAATTTGAAAGTAAATACATAAATAAACAAAAAAATCATCCAACAC
CCAAAGGTCATGGACGACCGACATGGCCATTTATAGGATATTCTAGAAAA
GCCCAGATTGCAGGAGAGAAAACAGAGGAGTTATTGCTAGGGGGCTATGG
AGTAAGGTAGGAAGGTGGATTACACAGGGCCACAGGGAAATCTTCTAAGA
TAATGGAAACAAACTATCTTTATTATACAGGTGGCTACATAATTGCATGT
GTTCATCAGAATCACAGAATTATCTGAGTACAGTGGCATTCACTTATAAT
CCCAGCTGCTAGGGAGACGGTGGCAGGAGGGTCTCTTCAACTGAAGAGCT
CAAAGTCAGACTGGGTGACACAGCAACAGAGCCTAATTCCTTAGAAATAA
AGCCTCTTAAAGACGCTTATCTCTATCACAATATCCCTCCAAGACTCGGA
GATCCACTGAGAAGGGGATGCAGAAAGACTGAAAGA

CTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTCTGATATAGAATCACCT
GGGTCAAAATCCAGGCTCTGCAACGTCCCAGTTCTGTGACCTTAAAAGAA
CTTGCCAACAGTTGGGCAGTGGTGGCGCACACCTTTAATCCCAGCATTTG
CAAGGCACAGGCAGGCGGATTTCTGAGTTCGAGATGACCAGCCTGGTCTA
CAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGGAAAACCCTGTCTCAG
AAAACCAAAACAACAACAACAACAAAAACTTGCTGACTTGTGTCTCAGTT
TTCTTTCTTTCTTTCTTTTCTTTTTTTTTTTTAAGATTTATTTTATTTGT
ATGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCGGATC
CCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCA
GGACGTTTGGAAGAGCAGTCAGCGCCCTTAACTGCTGAGCCATCTCTCCA
GCCCCATGTCTCAGTTTTCTTATCTGCAAAACAGACATTGTAATGACGTT
TTCTTACCACCATGTCGTGAAGCTCAAGTGAGAAAGGCTGTATTAAACAC
ATAAGCTAGAACATAGCAAGTACTCCACGAGTCCTTGCTGTTACAACTTT
TAAAGGCATGTATCTCCCCATAGCAACTCAC

Query= MSMg01no163_p03.b1 MSMg01no163_p03.b1 CHROMAT_FILE:
MSMg01no163_p03.b1 PHD_FILE: MSMg01no163_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:39 2005
         (688 letters)



>mm_chr1_159407774_159408861
          Length = 1088

 Score = 1210 bits (626), Expect = 0.0
 Identities = 644/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcgctcctccagcactatgtctgccagcaaactgtcatgcttcctgccatgat 64
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattcttcactcctccagcactatgtctgccagcaaactgtcatgcttcctgccatgat 591

                                                                       
Query: 65  gataatggactgaatccctgaaactgtaagccagtctcaattaaatgttttatgtataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gataatggactgaatccctgaaactgtaagccagtctcaattaaatgttttatgtataaa 531

                                                                       
Query: 125 agttgccttggtcatggtgtctcttcacagcaataaaacccaaactaaaacacgggtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 530 agttgccttggtcatggtgtctcttcacagcaataaaacccaaactaaaacacgggttaa 471

                                                                       
Query: 185 atacccacacacaataaaacataaatttgaaagtaaatacataaataaacaaaaaaatca 244
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 470 atacccacacacaataaaacataaatctgaaagtaaatacataaataaacaaaaaaatca 411

                                                                       
Query: 245 tccaacacccaaaggtcatggacgaccgacatggccatttataggatattctagaaaagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tccaacacccaaaggtcatggacgaccgacatggccatttataggatattctagaaaagc 351

                                                                       
Query: 305 ccagattgcaggagagaaaacagaggagttattgctagggggctatggagtaaggtagga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ccagattgcaggagagaaaacagaggagttattgctagggggctatggagtaaggtagga 291

                                                                       
Query: 365 aggtggattacacagggccacagggaaatcttctaagataatggaaacaaactatcttta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aggtggattacacagggccacagggaaatcttctaagataatggaaacaaactatcttta 231

                                                                       
Query: 425 ttatacaggtggctacataattgcatgtgttcatcagaatcacagaattatctgagtaca 484
           ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 230 ttatacaggtggccacataattgcatgtgttcatcagaatcacaaaattatctgagtaca 171

                                                                       
Query: 485 gtggcattcacttataatcccagctgctagggagacggtggcaggagggtctcttcaact 544
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 170 gtggcattcacttataatcccaactgctagggagacggtggcaggagggtctcttcaact 111

                                                                       
Query: 545 gaagagctcaaagtcagactgggtgacacagcaacagagcctaattccttagaaataaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 gaagagctcaaagtcagactgggtgacacagcaacagagcctaattccttagaaataaag 51

                                                             
Query: 605 cctcttaaagacgcttatctctatcacaatatccctccaagactcggaga 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  cctcttaaagacgcttatctctatcacaatatccctccaagactcggaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)