Query= MSMg01no164_e24.b1 MSMg01no164_e24.b1 CHROMAT_FILE:
MSMg01no164_e24.b1 PHD_FILE: MSMg01no164_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:08 2005
(315 letters)
>mm_chr1_187117818_187118532
Length = 715
Score = 563 bits (291), Expect = e-165
Identities = 306/311 (98%)
Strand = Plus / Minus
Query: 4 ggaattcatatgtgaaggtcagaggactactgatgggtcttgggtctccttccaccctgt 63
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 ggaattcatatgtgaaggtcagaggactactgatgggccttgggtctccttccaccctgt 501
Query: 64 gagtcgcagggatctaacttaggttgctgggcttgagagcaggcatgcctaccttctgag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagtcgcagggatctaacttaggttgctgggcttgagagcaggcatgcctaccttctgag 441
Query: 124 ccactccatcatctcttccctgcctctaaggctgtcttctggtgagcaccacagcaagca 183
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccactccatcatctcttcccttcctctaaggctgtcttctggtgagcaccacagcaagca 381
Query: 184 gcttccctccctcacagcaggctcctctctcaaggtcagagtggaactgcactgttcagg 243
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 gcttccctccctcacagcaggctcctctctcaaggtcagagtggaactgtactgttcagg 321
Query: 244 cagctgtgcccctcgagctcctggtgggcatctgatcctgccatacattgcctggcctct 303
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 320 cagctgtgcccctcgagctcctggagggcatctgatcctgccatacattgcctggcctct 261
Query: 304 gtctggagggc 314
|||||| ||||
Sbjct: 260 gtctggtgggc 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_e24.g1 MSMg01no164_e24.g1 CHROMAT_FILE:
MSMg01no164_e24.g1 PHD_FILE: MSMg01no164_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:08 2005
(598 letters)
>mm_chr1_186948508_186949505
Length = 998
Score = 1056 bits (546), Expect = 0.0
Identities = 588/602 (97%), Gaps = 7/602 (1%)
Strand = Plus / Plus
Query: 1 aaagcttcacaggcttttattagtttccccacacactggggatcccacttgccaaatagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaagcttcacaggcttttattagtttccccacacactggggatcccacttgccaaatagc 259
Query: 61 aaacacaaaactacatagttttcagtctgtgaccctctacaaacctgttcggctttgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaacacaaaactacatagttttcagtctgtgaccctctacaaacctgttcggctttgttt 319
Query: 121 tg-ttttttctcgagagtgggtctcacgcaacctaggcttactatacagccaagggtgac 179
|| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 320 tgtttttttctcgagagtgggtctcacgcaacccaggcttactacacagccaagggtgac 379
Query: 180 ctgggacttctaatattccttcttccacttcccaagtgccgggattgcaggcagacacca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgggacttctaatattccttcttccacttcccaagtgccgggattgcaggcagacacca 439
Query: 240 ccctgcccagtttttagtcagtactggggattgaacccaggtttcatgcatgctaggcaa 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 ccctgcccagtttttagtcagtactggggattgaacccaggcttcatgcatgctaggcaa 499
Query: 300 gcactctaccagctgactgcatccccaacctgcccaccaacttcttaaaaatataaacaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gcactctaccagctgactgcatccccaacctgcccaccaacttcttaaaaatataaacaa 559
Query: 360 agcctcaggctcaggtgaccagacct-ctgtcctgtggtaattcctaggacaaagaaatt 418
|||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 560 agcctcagtctcaggtgaccagac-tgctgtcctgtggtaattcctaggacaaagaaatt 618
Query: 419 ccattatgacccgggaacttccttcttttgtcacattaactatggaagacactcctggtt 478
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccactatgacctgggaacttccttcttttgtcacattaactatggaagacactcctggtt 678
Query: 479 gctctgg-aacctttgtctctattcttccgaagcagatgaaccctaaggcacctttcaac 537
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 679 gctctggtaac-tttgtctctattcttccgaagcagatgaaccctaaggcatctttcaac 737
Query: 538 agttcactcaaaggcagaagggcaccgatgtgctgga-agggagtgtaaaaggtgaacaa 596
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 738 agttcactcaaaggcagaagggcaccgatgtgctggacagg-agtgtaaaaggtgaacaa 796
Query: 597 tt 598
||
Sbjct: 797 tt 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
