BAC Information

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BAC

Clone NameMSMg01-164K23
Chromosome1 (Build37)
Map Location 36,349,105 - 36,377,798
singlet/doubletdoublet
Overlap geneArid5a
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr
Downstream gene4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164K23.T7 (MSMg01no164_k23.b1)MSMg01-164K23.TJ (MSMg01no164_k23.g1)
ACCAG363083AG363084
length738733
length of high quality
(start - end)		568 (132 - 699)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no164_k23.b1 PHD_FILE: MSMg01no164_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:36 2005CHROMAT_FILE: MSMg01no164_k23.g1 PHD_FILE: MSMg01no164_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,349,105 - 36,349,672)(36,377,512 - 36,377,798)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCATTGTCATCTGCAGACATTTTTTTTCCCAAAAATTTCTCTGTGCTT
AAATATTCCTAAAATAAATTTTACTCCCCAGGGTCAGGTGCTGAAAGTTT
GAGCCGGCATCAGCTACTTAGCCGTGCTGAGCTGGATCTCCTTCTTGCCT
CTAGATGGTCAGTTCTTTGATGGCCTAGTCGTTCGCAGTCATTCCCACAA
GGAATCCAGCAGCAGCAGCAGCAGCTACATGGTGAGTTTGGGGCTAGTCT
TAGGCTACATTAGACAGTGTCTCTATATCTGAAACAAAACAAAACAAAAA
ACAATTTTTTTTTAGGTTAAAAAATAATTAGGAAGGCTGACTACAATACA
CACTTGGAATTCTTAGCCAGGAGACTAAAGCAAGAGGTTTCTTTTCTTTT
CTTTTCTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCCGGCT
GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGATATCCG
TGTCCTTCTGCCTCCAAGTGCCTGCAAGTGCTGGGATTAAAGGCATGCGC
CACTACCACCCAGCTATCTATTTATTTTATGTATGTGAGTACACTGTAGC
TGTCTTCAGACACACCAGAAGAGTGCATCAAATCCCATTACAGATGGTTG
TGAGCCACCATGTGATTGCTGGGAACTGAACTCAGGAC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTAGGTCGGGAGTCCGAGACTAACC
TGAGCAACACAGCAAGAACCTCTCAGAGCAAGTGATGCCGTTCACTGAAA
GACCCGAGGCCTTCTGGGATGGGGGCGTGTGGCTCAGCTCAGAGGGTTGC
AGTGACACAGCCCCGCCATCTTGTCTCACAGGTCACCAGTGTGCTCTGGG
CTTTGGCACCGTGGCAACCTCAACAGTCAGGTGCCCCGAGGCTGGAGCTG
GAGCGAAAGGAATCACAGCTGTTCATCTGTGCACCAGAGGCTGAGTTTGG
CTCTGGCCCTGTCATCCTTCCAGTGCGCCGATGGCAGCCAGGCCAGAGTG
GCCTCGTTTCATCTTTGCTCGCACATTGGTCACCACACCTACACACTTGC
TCCTGCCTCACCTCCCCTTGCAAACATCCAGTGCTGTACACCCCAGGGCT
GAGTGCAATCACACCAGTGTCTTTTTATTGGGTCTTTCATGGCCAACCTG
GATGCCTTGAGCTGCCAACTAGCTCCCCGGCTTCTCAGTGGAGAGAAAAT
ACCAGCTCAGGTACTTTCATGATCTTACCACAACTTGGTCCCCTGGCTTT
GGGCCCGGGCTGCTTCATTCAGACAAGCCTCACTGCCTCCCTGCTGTCTG
CACCAGAGAGACACAGACTCGGTGAGTCTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_k23.b1 MSMg01no164_k23.b1 CHROMAT_FILE:
MSMg01no164_k23.b1 PHD_FILE: MSMg01no164_k23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:36 2005
         (568 letters)



>mm_chr1_36348905_36349872
          Length = 968

 Score = 1060 bits (548), Expect = 0.0
 Identities = 563/568 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcaggtgctgaaagtttgagccggcatcagctacttagccgtgctgagctggatctcc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ggtcaggtgctgaaagtttgagccggcatcagctacttagcggtgctgagctggatctcc 260

                                                                       
Query: 61  ttcttgcctctagatggtcagttctttgatggcctagtcgttcgcagtcattcccacaag 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ttcttgcctctagatggtcagttctttgatggccgagtcgttcgcagtcattcccacaag 320

                                                                       
Query: 121 gaatccagcagcagcagcagcagctacatggtgagtttggggctagtcttaggctacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatccagcagcagcagcagcagctacatggtgagtttggggctagtcttaggctacatt 380

                                                                       
Query: 181 agacagtgtctctatatctgaaacaaaacaaaacaaaaaacaatttttttttaggttaaa 240
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacagtgtctcaaaaactgaaacaaaacaaaacaaaaaacaatttttttttaggttaaa 440

                                                                       
Query: 241 aaataattaggaaggctgactacaatacacacttggaattcttagccaggagactaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataattaggaaggctgactacaatacacacttggaattcttagccaggagactaaagc 500

                                                                       
Query: 301 aagaggtttcttttcttttcttttcttttttggtttttcgagacagggtttctctgtgta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagaggtttcttttcttttcttttcttttttggtttttcgagacagggtttctctgtgta 560

                                                                       
Query: 361 gccccggctgtcctggaactcactttgtagaccaggctggcctcgaactcagatatccgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccccggctgtcctggaactcactttgtagaccaggctggcctcgaactcagatatccgt 620

                                                                       
Query: 421 gtccttctgcctccaagtgcctgcaagtgctgggattaaaggcatgcgccactaccaccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccttctgcctccaagtgcctgcaagtgctgggattaaaggcatgcgccactaccaccc 680

                                                                       
Query: 481 agctatctatttattttatgtatgtgagtacactgtagctgtcttcagacacaccagaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctatctatttattttatgtatgtgagtacactgtagctgtcttcagacacaccagaag 740

                                       
Query: 541 agtgcatcaaatcccattacagatggtt 568
           ||||||||||||||||||||||||||||
Sbjct: 741 agtgcatcaaatcccattacagatggtt 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_k23.g1 MSMg01no164_k23.g1 CHROMAT_FILE:
MSMg01no164_k23.g1 PHD_FILE: MSMg01no164_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:36 2005
         (287 letters)



>mm_chr1_36377312_36377998
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaggtcgggagtccgagactaacctgagcaacacagcaagaacctctcagagcaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tttaggtcgggagtccgagactaacctgagcaacacagcaagaacctctcagagcaagtg 428

                                                                       
Query: 61  atgccgttcactgaaagacccgaggccttctgggatgggggcgtgtggctcagctcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atgccgttcactgaaagacccgaggccttctgggatgggggcgtgtggctcagctcagag 368

                                                                       
Query: 121 ggttgcagtgacacagccccgccatcttgtctcacaggtcaccagtgtgctctgggcttt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggttgcagtgacacagcccctccatcttgtctcacaggtcaccagtgtgctctgggcttt 308

                                                                       
Query: 181 ggcaccgtggcaacctcaacagtcaggtgccccgaggctggagctggagcgaaaggaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggcaccgtggcaacctcaacagtcaggtgccccgaggctggagctggagcgaaaggaatc 248

                                                          
Query: 241 acagctgttcatctgtgcaccagaggctgagtttggctctggccctg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acagctgttcatctgtgcaccagaggctgagtttggctctggccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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