BAC Information

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BAC

Clone NameMSMg01-164M17
Chromosome1 (Build37)
Map Location 178,889,920 - 178,890,228
singlet/doubletsinglet
Overlap geneSdccag8
Upstream genePld5, B020018G12Rik, Cep170, LOC666235
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164M17.T7 (MSMg01no164_m17.b1)MSMg01-164M17.TJ (MSMg01no164_m17.g1)
ACCAG363153AG363154
length740815
length of high quality
(start - end)
315 (46 - 360)67 (71 - 137)
definitionCHROMAT_FILE: MSMg01no164_m17.b1 PHD_FILE: MSMg01no164_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:45 2005CHROMAT_FILE: MSMg01no164_m17.g1 PHD_FILE: MSMg01no164_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAAGCTGTGTTTCTATGAAAAGGGTTTGAAAGAAGTCTGAGGA
TGCTGAGTTAGAAAAAGAGGCAAGGTTGTAAAGTTTCTGAGAATGGACAG
CTGTCTAACCACAAGGCATTAAGCAGGGATTAATTCTGGACTTAAGGAGC
CCCTTCCCCAGCCCTGCAACTGCAGGAGGCCCTGATGGCTTTACTGCTGT
GGTGAAAGTGAGGTGGGCCAAGGCCAGATCTGTGTACTTTTCGGGTATTG
GGGCTCTCATCTGTTCTGCACCATCTTCACCAAGGGATTCACAAGGTGAC
TCCCTCGTGTTTCTACTGTGCCCACCACCATGGGTAGAGAGCCTAGGTAA
TCACTGTAGAAGAACCAAGGCTTTTTGATTCAGGGTGTTAAAGGTTTCTA
TCCAAAGTTCATTGATCCTTTTGCTTTGGGCCTGATGCTGCCCTGGTGAA
AGCTGACAGAGAAAAGATGCTTACCCCTAAGTGGTTCTTCAGTAAGCTTT
TCATCATTGTAACAAGATGCCTGATAAGACAGCTTATTTATTTTGGATCC
TACGTTCTGAAGCTTCTATCCTGCCCCTGGCTAGGTTCATTGCTTAGTGA
TGAACGCCATCTTGTAACCCAGAAAGAATCTGCCTTCTTAACATTTAATC
AGGGAAGGCCAGATCCCGAATTCAAAACAATAACTTATAG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGGTTTAGTTCTATACCCCATTTTTTGAT
TGGGTTGTTTGGTTTTTTTGGTGGTTAGTTTCTTGCTTTCTATATAAATC
TAGAATAATATNTNTTATAGNAAGAAAANTTTACCCCACTTATAATATAT
TATTTAATAACACCCCCACTATTCCCACCCTCTTCTACCATCACACTCTA
TTTTTACTTATTATCCATCTCTCCCTCAATTTTTCTTCCTATCCCCCCCC
CCGGCCTTCCATATATAATATTATTTTTATAGCTCAACGCCGGNCNNNTT
TANNNNTTTTTTTTGTAATTTCCAANACAAAACCCTATGATATAATTTTT
TTATTTTTTTTTATTTTTCCCCCCCCCAAAAAAAAAAAAAAAAACCTCTG
CGGGGGTTGGAGCTACTCCTCCCCTAATTTATATCATCTTTACATTAACA
CAAAATTCATACTAATCATACATAACACTCTCCTACTCCCCATATTTATC
TTTCCCTTCTCCCACCCTCCACAAAACCAAATTTAATTTATTCCTTCATC
TCTCCTCTCCTCTTTTTTTTTCTTTCTTCATCAAATTCGCGCCATTCAAT
ATATTCTAAATCATTACCAATAACTTTCAATCACTTCTTTATATAAAATC
CACATCTTCTATTAATTTCTATTCATGTTACCACATCCATCCTCTTTCTT
AACCCTTCACTGTCGCTCTCCACACCCACCGCATTATTTCTTCCCTCTCG
CTCACCTTACATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_m17.b1 MSMg01no164_m17.b1 CHROMAT_FILE:
MSMg01no164_m17.b1 PHD_FILE: MSMg01no164_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:45 2005
         (315 letters)



>mm_chr1_178889715_178890429
          Length = 715

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcaaagctgtgtttctatgaaaagggtttgaaagaagtctgaggatgctgagtta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattctcaaagctgtgtttctatgaaaagggtttgaaagaagtctgaggatgctgagtta 265

                                                                       
Query: 66  gaaaaagaggcaaggttgtaaagtttctgagaatggacagctgtctaaccacaaggcatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gaaaaagaggcaaggttgtaaagtttctgagaatggacagctgtctaaccacaaggcatt 325

                                                                       
Query: 126 aagcagggattaattctggacttaaggagccccttccccagccctgcaactgcaggaggc 185
           |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct: 326 aagcagggattaattctggacttaaggaaccccttccccaaccctgcaacagcaggaggc 385

                                                                       
Query: 186 cctgatggctttactgctgtggtgaaagtgaggtgggccaaggccagatctgtgtacttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctgatggctttactgctgtggtgaaagtgaggtgggccaaggccagatctgtgtacttt 445

                                                                       
Query: 246 tcgggtattggggctctcatctgttctgcaccatcttcaccaagggattcacaaggtgac 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcgggtattggggctctcatctgttctgcaccatcttcaccaagggattcacaaggtgac 505

                    
Query: 306 tccctcgtg 314
           |||||||||
Sbjct: 506 tccctcgtg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)