BAC Information

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BAC

Clone NameMSMg01-165G01
Chromosome1 (Build37)
Map Location 150,329,359 - 150,329,642
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165G01.T7 (MSMg01no165_g01.b1)MSMg01-165G01.TJ (MSMg01no165_g01.g1)
ACCAG363557AG363558
length713715
length of high quality
(start - end)
389 (325 - 713)390 (326 - 715)
definitionCHROMAT_FILE: MSMg01no165_g01.b1 PHD_FILE: MSMg01no165_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:30 2005CHROMAT_FILE: MSMg01no165_g01.g1 PHD_FILE: MSMg01no165_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCCGAGGNTGGGCGGAATT
CTCCTCACTAACTNAAAAAAGTGTTAATGTGAACATTATTCATTTAATAA
CAAAATAATAGTAATTTATCCACTAAAATATCTTTCAATGCTTAGGGTCT
CTTAATAGTGGATATAGCAGAATATATGAAAAAAACATTCTAGCCTTAGA
TTTAATTAAGGAATAGCTGAACTACAGCTGAACCCTGGTGTAGAACACAG
TGTGAAATAGAATTTTTAGTATAAAGGTTAATGGCTTAATTAGTCACATT
TCAATGTTTAATTCTAACATACGTTCAACCAGTTGACTGTAAAGTTCAAT
TTTTTTTCTTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTTCTTTTTTTGTTTTTATTTTTTTTTTTTTATTTTTTATTTTGCCAT
TGGTCATTTCCTCTAGAAACCTTTTTACCACTGAGGGATCCTGAATAAGA
TAGCACATGATCAGAGCAGAAAAAGCATGAATTTGGCCATATTATTTACA
TGTTATCAGGACTTGGTAGGTGAAAATTTAATAAGCATGGTTTGATAAAT
GTTATTTATTTCTTAAGAATGGAAATTGTCTCAGTAAGATTCTACAACAA
CTCCTATACTGTN
ATGAAGTGGGAGGCCTGGNGGCCGCCTGGTTTCAGAATAGAGGTNGAACT
ATAGAAGGTTACGAAAAATTCTTTGTTTAGCTCTCTACCCCATTTTTTTA
ATAGCATTATTTGATTTTCTCAGAGTCCATCTTCTTGAGTTCTTAATATA
TATTGGATATTAGTTGCCTATCTGATTTAGGATTGGTAAAGATCCTTTCC
CAATCTGTTGGTGACCTTTTTGACTTATTGACAGTACATTTGCCTTACTG
AATTTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTACAAC
AGAAGCCATTGCTGTTTNGTTCATGAATTTTCCCCCTGTGCCCTTATCTT
CGAGGCTATAGGGGAGGACTTTCTAAATAAATCTCCAGTTTCTTGGCAAA
TAATATCAACAGTCATTAAACAGGACCTCGTGAATCAAAAATACTTCTGT
ACAGCAAACAGTTAAGAGTGTATAGACAGCCTACAGAACTGAAGAAAAAG
CTAGCCAGCTATGAATTTGACAGAGGAATAATAACTAGAACTTACAAAAG
AACTTAAAAAAAATCAAACTACCTAATCAATAAGCAAAGGAATAAAATTA
ACACACAGGGAAATGTAAATTCGAACTACAGTGATGTTTCAATACAACCA
AACTAGAATTAAGAAATAAATCACAATATGTGTTNGGTGGGTTTTGACAA
AAAGGAATTTTCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_g01.b1 MSMg01no165_g01.b1 CHROMAT_FILE:
MSMg01no165_g01.b1 PHD_FILE: MSMg01no165_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:30 2005
         (389 letters)



>mm_chr1_150328991_150329779
          Length = 789

 Score =  458 bits (237), Expect = e-133
 Identities = 277/295 (93%), Gaps = 13/295 (4%)
 Strand = Plus / Minus

                                                                       
Query: 96  tttctttctttctttctttctttctttctttcttttctttttttgtttttattttttttt 155
           ||||||| ||||  |||||||||||||||||||||||||||||  ||||||      |||
Sbjct: 652 tttcttt-tttc--tctttctttctttctttcttttctttttt--ttttta-----attt 603

                                                                       
Query: 156 tttt--attttttattttgccattggtcatttcctctagaaacctttttaccactgaggg 213
           ||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttttaaatttttta-tttgccattggtcatttcctctagaaacctttttaccactgaggg 544

                                                                       
Query: 214 atcctgaataagatagcacatgatcagagcagaaaaagcatgaatttggccatattattt 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 atcctgaataagatagcacatgatcagagcagaaaaagcatgaatttggccatattattt 484

                                                                       
Query: 274 acatgttatcaggacttggtaggtgaaaatttaataagcatggtttgataaatgttattt 333
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 483 acatgttatcaggacttggtaggtgaaaatttaataagcatggtttgataaatgttaaaa 424

                                                                  
Query: 334 atttcttaagaatggaaattgtctcagtaagattctacaacaactcctatactgt 388
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atttcttaagaatgaaaattgtctcagtaagattctacaacaactcctatactgt 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)