BAC Information

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BAC

Clone NameMSMg01-165I17
Chromosome1 (Build37)
Map Location 147,653,612 - 147,653,967
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667877, LOC625057, LOC383570
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165I17.T7 (MSMg01no165_i17.b1)MSMg01-165I17.TJ (MSMg01no165_i17.g1)
ACCAG363669AG363670
length745753
length of high quality
(start - end)		59 (249 - 307)665 (65 - 729)
definitionCHROMAT_FILE: MSMg01no165_i17.b1 PHD_FILE: MSMg01no165_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:44 2005CHROMAT_FILE: MSMg01no165_i17.g1 PHD_FILE: MSMg01no165_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCCAAACGACTACTATATTTCCGGAGCCGCGGAANNCANNCNGNTC
TTGCCNNGAGGGGGGANNAGCANNNAGNGANCNACANANNNCANNNGGGG
GNNAACCTACCCCCCAAANNAGNCCCACAANNNNNAAGAAANNNNCNNCA
NNNACANNNCCAAGGCNANNNCAAAANNCCCCAACACCCNNCCCCCCACC
CGGCNCNCCNACCCACNCAANNCCACNNCNGGGCCCGGGGGNTTTTTTGT
ACCGGGGCATATAAAGTTAGCAATACCAAGGGGCCTCTCTTCCCAGTGAT
GGCCGACTATTTCTTTTTCTGCNACGNANGCAGCNAGAGACACAAGCNCG
GGGGACACCGCCCACGCCAACANCANGGNNCCACCNANAGGGNGGCAGAC
CCCNNCAGGGCNNNCNCNAGCACCAAAANGGGGGGNCCGGGGGACCANCG
NANCGAGGACGGGGAGCANCNACNCCGGNANNNACCAGGGGCGGGCAAAG
CCNCACAGGAGACAGCNANANCAGGGNCCCNNCAGCAAAANCNGGCGGGC
CNNNGGGGGGAAGCCGCCCCCACANNCGCCGGGACAAGAGGGCGCGGACA
GCGGNGGACNAAGGGANAAACAAACAACCGGCGCAAGCGCCAAGGGNNAC
CCTCCTTTTTTTGTACTCTGCCTTCCCCGTGGCAACAACTCGGCCATGGG
CTGCAGCCAATCAGGGAGTGATACGCCCTAGGCGAACGAAACTCT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAAGCCCTTGATCTTGGTCAAGGATGTTCTAGGACT
GTTGGAACACTGGCGGAAGGCTTTAGCCATGTCAGAATTCAATTTTAAAA
AGCACTTCTAGTAGGAAAATACTGAAAGAGAGCACTTGGATCCATACACT
AGACTAACACGGTAATGAAACGCGGGAATGAAAATTTAATGTATGGGTAG
AGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCAT
GAGTGACTTTTAAGCCTTTCGGCTTGTCCAGCTGACTCGACCAGAGAGCT
TAGCACTCATCCAATCAGAATCACACTCGCTCCAGGCACAGTGGGTCACA
GATAGGCTGACAGGTCCGGATCTCGAGGAACAGTCCAGCCTGGCAGGCAG
CCCATGCATGCTTTTTCACTGTGCATGCTTAGGCAAGGCAGTAAACCTGT
GGGATTCACGGGGCCTGGCAATGGGCCAGGGCACCATCTAGGCCCATATG
GCTGGCCGCACCTGCTTCCCGCAATGACATCCCCTCACAGCCTACTGTCT
GTCTGCCTCCCAGAAAGCACAAAATAACCAGGATCAAAGCCTTCCTGCCT
CCCAGGAGGTCCTCAGTAACTAGGGGCACAGACTGTCTGTCTCAAGGGAG
GTCTGCAGTTACCAGAGACACAGGTGGCCTGCTCTAACCAAAGACACAAG
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_i17.g1 MSMg01no165_i17.g1 CHROMAT_FILE:
MSMg01no165_i17.g1 PHD_FILE: MSMg01no165_i17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:44 2005
         (665 letters)



>mm_chr1_147652903_147653967
          Length = 1065

 Score =  642 bits (332), Expect = 0.0
 Identities = 350/356 (98%)
 Strand = Plus / Minus

                                                                        
Query: 310  cactcgctccaggcacagtgggtcacagataggctgacaggtccggatctcgaggaacag 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1065 cactcgctccaggcacagtgggtcacagataggctgacaggtccggatctcgaggaacag 1006

                                                                        
Query: 370  tccagcctggcaggcagcccatgcatgctttttcactgtgcatgcttaggcaaggcagta 429
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1005 tccagcctggcaggcagcccatgcatgctttttcactgtgcatgcttgggcaaggcagta 946

                                                                        
Query: 430  aacctgtgggattcacggggcctggcaatgggccagggcaccatctaggcccatatggct 489
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945  aacctgttggattcacggggcctggcaatgggccagggcaccatctaggcccatatggct 886

                                                                        
Query: 490  ggccgcacctgcttcccgcaatgacatcccctcacagcctactgtctgtctgcctcccag 549
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 885  ggccgcacctgctttccgcaatgacatcccctcacagcctactgtctgtctgcctcccag 826

                                                                        
Query: 550  aaagcacaaaataaccaggatcaaagccttcctgcctcccaggaggtcctcagtaactag 609
            ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 825  aaagcacaaaataaccaggatcaaagccttcttgcttcccaggaggtcctcagtaactag 766

                                                                    
Query: 610  gggcacagactgtctgtctcaagggaggtctgcagttaccagagacacaggtggcc 665
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765  ggacacagactgtctgtctcaagggaggtctgcagttaccagagacacaggtggcc 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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