Query= MSMg01no165_m13.b1 MSMg01no165_m13.b1 CHROMAT_FILE:
MSMg01no165_m13.b1 PHD_FILE: MSMg01no165_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:04 2005
(291 letters)
>mm_chr1_124583977_124584667
Length = 691
Score = 414 bits (214), Expect = e-120
Identities = 267/288 (92%), Gaps = 8/288 (2%)
Strand = Plus / Minus
Query: 1 agagaaaccctgtcacaaaaaaaaaaaaaaatcatttccatataa--tttctccataact 58
|||||||||||||| | |||||||||| |||||||||| ||| ||| | ||||||
Sbjct: 502 agagaaaccctgtccc----aaaaaaaaaattcatttccatttaagttttat--ataact 449
Query: 59 attgtcttaacatattttaattgacatatagaatatgtaaattttattaagtatcatgtg 118
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 448 attgtcttaacatattttaattggcatatagaagatgtaaattttattaagtatcatgtg 389
Query: 119 atatcctaattaaagttataaatgtgatgttaacatctaaacaacaaaacagaacttctc 178
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 388 atatcctaattaaagttataaatgtggtgttaacatctaaacaacaaaacagaacttctc 329
Query: 179 ctacctaagcaaactttagcatccactgataaccctttcattgtgccctcctctccagtc 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctacttaagcaaactttagcatccactgataaccctttcattgtgccctcctctccagtc 269
Query: 239 ttaatattttttttttttgggaaccagtgttctatcctcaatatcttt 286
|||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 268 ttaatattttcagtctttgggaaccagtgttctatcctgaatatcttt 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no165_m13.g1 MSMg01no165_m13.g1 CHROMAT_FILE:
MSMg01no165_m13.g1 PHD_FILE: MSMg01no165_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:05 2005
(293 letters)
>mm_chr1_124408883_124409575
Length = 693
Score = 497 bits (257), Expect = e-145
Identities = 284/293 (96%)
Strand = Plus / Plus
Query: 1 ttctctttgccagcaagttatcattcatatatctaccatctactctctacctacctttga 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctctttgtcagcaagttatcattcatatatctaccatctactctctacctacctttga 260
Query: 61 tctatctacttttgaattatctatcaatcatctatctatgccttctttccctctataatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctatctacttttgaattatctatcaatcatctatctatgccttctttccctctataatt 320
Query: 121 tgtacaagtttgacttctttttaaatttttttggagagcttgatatgaaatctaacagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtacaagtttgacttctttttaaatttttttggagagcttgatatgaaatctaacagcc 380
Query: 181 aatatcttatatataaaatgaatttaaaatttgagttttaattttcattagcaaactttt 240
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 aataacttatatataaaatgaatttaaaatttgagttttaattttccttagcaaactttt 440
Query: 241 tcacatttttttttttctagactattgttaaacattgatttaataaatgataa 293
||||||||| || ||||||||||||| |||||||||||||| |||||||||
Sbjct: 441 ccacatttttgttattctagactattggcaaacattgatttaaaaaatgataa 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
