BAC Information

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BAC

Clone NameMSMg01-165M14
Chromosome1 (Build37)
Map Location 78,512,600 - 78,513,011
singlet/doubletsinglet
Overlap geneMogat1
Upstream geneLOC100039330, Pax3, LOC100039210, Sgpp2, LOC100039382, Farsb
Downstream geneAcsl3, Utp14b, LOC620521, Kcne4, LOC100039260, EG545332, Scg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165M14.T7 (MSMg01no165_m14.b1)MSMg01-165M14.TJ (MSMg01no165_m14.g1)
ACCAG363823AG363824
length7431,145
length of high quality
(start - end)		551 (38 - 588)34 (377 - 410)
definitionCHROMAT_FILE: MSMg01no165_m14.b1 PHD_FILE: MSMg01no165_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:05 2005CHROMAT_FILE: MSMg01no165_m14.g1 PHD_FILE: MSMg01no165_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
TGGCCCACCGAGTGGTATTATTAGGAGGTGTGGCCTTGTTAGAGTAGGTG
TGGCCATGTTTGAGGAAGTGTGCCACTTTGGGCATGGGCATTGAGATCCT
TCTCCTAGCTGCCTGGAAGACAGTCTTCTAGCTACCTTCTGATTAAGATG
TAGAATTCTCAGCTCCTCCAGTATTATGCCTGCCTGGATGCTATCATGTT
TCCCACCTTGATGATAACAGACTGAACCTCTGAACCTGTAAGCCAGCCCC
AATTAAAAGTTTGCCTTTGTAAGAGTTGCCATGGTCATGGTGTCTGTTCA
CAGCAATGGGAACCCTAGCTAAGACAGAACGTATTCAGGACAGCTACAAG
ATAAACAAGCAGCAGCACGGGGACACACAAACTACAATTTATTCACTCAA
TAGAACATAACTTAAGGTGGCACCACTTGGTGCAGGCGGGATGAAGACAA
CTTCCGTTGAGCTGAGACCACCTCAGAAGACAGAACCCCACCCCCCCACC
TCTCCACCCCATCTCCACCCCCGCCAAGTGCCACTAAGATGATGGAGAGA
TGGAAGAGAAAGAGAAGCAGAATGTTATGTGCACAATGAAGAGAGGGGGA
ACTGGAGACTCCGAGGTTAGTGAGAGGAACAGTGTAATGTGAGTGGCCTT
CGACACCACCTGAGGCTATGATGACGCCTCGGTCCTGAGCTGN

NATTCCCNNNAAAGATGTGAGCTGNGGCGXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCGATAGCCTGGATCTCTCTCTCTCTG
GAAACAATTTAAATGGCTCACTCGCCTCCCTCAGGTGTCATTCCCAACTT
CCGACAGACCTAGCATCTGCATCTAACTTCCTCCCGGTCATTCATACCCC
TTACCTAGCACACGGAGGCACTTTCTGTTTAGGAGGAGATTTACTAAATG
TCTGTCTCTGGCCTCCAGTCCCCGCAGAACCAGTGTCTGCCCTCCATCCG
AGTTCAGCTCTCAGGCACTGCTTGAAGACAATCTTTGACACACGAGTATC
AATTATCCTGTAAGCACGCTGCTGTCTGTGATGTTATTATGCTATAAAGG
GGAGAGCCCCAAGAGAGCCGTGGGTGGATGCTGCTCCCTTTACTGCTGCC
CCCACTGCTACCGGTCCCCGCGCTGAAGAACCCCGCCATTGTATTTGTTT
GCTGTTTTGCTCTTTTTTGCTGAATTGCTGGTTTGCTGCTTGCTGGGTTT
CTGGATTGCTGGTATTCTCTATCCTGATGACAAGATTGGCCTCTAGGAAC
TCAATGACCCTAATCCGCAGGAAGCAGTCCAAAGAGGTCCTACACCTTTC
CCCTCTAACCTTCTTTCTCCCTTACTCCGTGTCCCGGGATTGGAAGGGAT
TGAACTGGACCGAGGTGGTGGCAGCCATAACACCCCCATCAAGTACCCCA
AGACTATGGCTACCCCCCAGCCCCCCCAAAAGAGGTAGCGCCCCCCCAGA
CTTTGCGAGACCCCCTGTTCCCTCTAATTAACCCCTCCTCCCGCCGCGGT
CTTGATAAAAAATTCCGACCCAAAACCCCCACATCACCCCCCCCAATCCA
CCACAACACTTTTCCGCCCTGGGTCCCCTGTTTTTCCGGGGCACCCCCTC
CCCCCCCCCCACAAACCTTTCCCCCCCGGCCCCCCCCGGCCCCCTGGGCA
GAAAACCCCTCTTCCCCATCCCCCAAACCTCCGTCCCCCCCCTCCCCAAC
GGCGCCAAACCCCCCCTCCCCTTCCTAATCCACCCTCCCCTCCGGCCCTT
CCTCCTCCCCCACGCACCACCCCTCCTCCACCACACCACCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_m14.b1 MSMg01no165_m14.b1 CHROMAT_FILE:
MSMg01no165_m14.b1 PHD_FILE: MSMg01no165_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:05 2005
         (551 letters)



>mm_chr1_78512061_78513011
          Length = 951

 Score =  766 bits (396), Expect = 0.0
 Identities = 408/412 (99%)
 Strand = Plus / Minus

                                                                       
Query: 140 tctagctaccttctgattaagatgtagaattctcagctcctccagtattatgcctgcctg 199
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 tctagctaccttctgatcaagatgtagaattctcagctcctccagtattatgcctgcctg 892

                                                                       
Query: 200 gatgctatcatgtttcccaccttgatgataacagactgaacctctgaacctgtaagccag 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gatgctatcatgtttcccaccttgatgataacagactgaacctctgaacctgtaagccag 832

                                                                       
Query: 260 ccccaattaaaagtttgcctttgtaagagttgccatggtcatggtgtctgttcacagcaa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ccccaattaaaagtttgcctttgtaagagttgccatggtcatggtgtctgttcacagcaa 772

                                                                       
Query: 320 tgggaaccctagctaagacagaacgtattcaggacagctacaagataaacaagcagcagc 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgggaaccctagctaagacagaacgtattcaggacagctacaagataaacaagcagcagc 712

                                                                       
Query: 380 acggggacacacaaactacaatttattcactcaatagaacataacttaaggtggcaccac 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 acggggacacacaaactacaatttattcactcaatagaacataacttaaggtggcaccac 652

                                                                       
Query: 440 ttggtgcaggcgggatgaagacaacttccgttgagctgagaccacctcagaagacagaac 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 ttggtgcaggcgggatgaagacaacttccgttgagctgagaccacctcagaagacagaac 592

                                                               
Query: 500 cccacccccccacctctccaccccatctccacccccgccaagtgccactaag 551
           ||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct: 591 cccacccccccacctctccaccccacccccacccccaccaagtgccactaag 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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