BAC Information

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BAC

Clone NameMSMg01-165N14
Chromosome1 (Build37)
Map Location 190,640,055 - 190,640,454
singlet/doubletsinglet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165N14.T7 (MSMg01no165_n14.b1)MSMg01-165N14.TJ (MSMg01no165_n14.g1)
ACCAG363863AG363864
length726725
length of high quality
(start - end)
598 (37 - 634)579 (67 - 645)
definitionCHROMAT_FILE: MSMg01no165_n14.b1 PHD_FILE: MSMg01no165_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:10 2005CHROMAT_FILE: MSMg01no165_n14.g1 PHD_FILE: MSMg01no165_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAGCCGCGGAATTCACCA
CTATTCACCGCTATTGTTGTGAACAAAGTATTCCCTGGAATGGCCACACC
AATGTCCACCATGTCTTCTGGTAAAAGGCAGGCTATTTCCTCATCAGAAC
CTGAATTTAGTGTCTTGAGAGATTAGCTGGTAAAGTCCTTCCATGCAAGC
AAGAAGACCTGAGGTTTGTCTTGCAGTACCCACACAAAATGTTGTTCATG
AGTGAATCTTCCTGCACAGCCACTGCTAGGAGAGCAGAGAGGAACCTCTG
GGGTGCAGCCAGGCAGTCTTGCCTAATTGTCAGGTTCCTGCTCAGTGAAA
GAATGTATCAAAAAATAAGGCAAAGGGGCTCAAACTCTCAGCCAGTCCCA
CAGCATTCCAGAGGAAGCACCACTCCCAGGCGCTCTAACACGCCCAAGAT
CCCAGGGTCACACCAGAATCCCAGGGTCCCAGGGGAAGCTTGACTCCCAG
GAGCTCTGACACACCCAGGATCTGAGGATCAGAGAATCCTAAAATCACAG
GATCACAGAGACAGCTGGACTCTGGGAAATTCTGACACAACTAGGATCAC
AGGAAGGACAGGTTCCAGTCAGATATATTGAGGACAGGTAGCACTATTGA
GAACCAGATGGCTGGAAGCAAGCTTAAGAACAGAAACCAAGGTTACTTGG
CATCATCAGAACCCATTCCTCCCAAN
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATAGAATGGAATCCAAAGACCCAGGCATAAATC
CACACAGCTATGGACATCTGTTTTTAATAAAGAAGCCAGAAATATACAAT
GGGAACAAAGAAAGCATCTTCAACAAAACCTGATAGAAGAGAAAGCAGGG
AACAGCCGTGAGTGCATTGGCGAATGGGAGGGCTTCCTGAATGGAACAAT
AACTCAGGCACCAAGATCAACAATTAACAAATAGGACCTCTTGATACTGA
AAAGCTTCTGTAATGGAAAGGACATTGTCAAGATGATAAAATGATAGCAC
ACGGAATGGGAAGAGATTTTTACCAACTCCACATCTGACAGCATACACTG
ATGAATCCAGGCAATTAATGAATTCAATTAATGAAGGGATGGGCTTCCGG
ACAGATTATCGAATCCTAGTTTTGAGCCCTAAATAAATACAGTGCACAGA
AAATGAACTCATCAGACACTTAACAATTTTCATGACCATGTAAAGGAGAA
TCAAACTCAAAGTCAGCTCAGGCTATGTTTCAAGTTCAAGGCCAGTCTTG
GCAATTTAGTGAAACTCTGTTTCATAACTAACACATGAGAGCTGGCCGGC
GACACAGCTCATTGGGAAAGCGCTTGTTAAGACTGGGTAAGGTGGGGGCT
CTACCATAGTACTGTTACCAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_n14.g1 MSMg01no165_n14.g1 CHROMAT_FILE:
MSMg01no165_n14.g1 PHD_FILE: MSMg01no165_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:10 2005
         (579 letters)



>mm_chr1_190639474_190640454
          Length = 981

 Score =  708 bits (366), Expect = 0.0
 Identities = 391/400 (97%), Gaps = 2/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 182 aataactcaggcaccaagatcaacaattaacaaataggacctcttgatactgaaaagctt 241
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 aataactcgggcaccaagatcaacaattaacaaataggacctcttgatactgaaaagctt 922

                                                                       
Query: 242 ctgtaatggaaaggacattgtcaagatgataaaatgatagcacacggaatgggaagagat 301
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ctgtaaaggaaaggacattgtcaagatgataaaatgatagcacacggaatgggaagagat 862

                                                                       
Query: 302 ttttaccaactccacatctgacagcatacactgatgaatccaggcaattaatgaattcaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ttttaccaactccacatctgacagcatacactgatgaatccaggcaattaatgaattcaa 802

                                                                       
Query: 362 ttaatgaagggatgggcttccggacagattatcgaatcctagttttgagccctaaataaa 421
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 801 ttaatgaagggatgggcttccggacagattatcgaatcctagttttgagccctaaataca 742

                                                                       
Query: 422 tacagtgcacagaaaatgaactcatcagacacttaacaattttcatgaccatgtaaagga 481
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacagtgcacagaaaatggactcatcagacacttaacaattttcatgaccatgtaaagga 682

                                                                       
Query: 482 gaatc--aaactcaaagtcagctcaggctatgtttcaagttcaaggccagtcttggcaat 539
           |||||  |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 681 gaatcataaactcaaagtcagctcaggctatgtctcaagttcaaggccagccttggcaat 622

                                                   
Query: 540 ttagtgaaactctgtttcataactaacacatgagagctgg 579
           ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 ttagtgaaactctgtttcaaaactaacacatgagagctgg 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 981
Length adjustment: 10
Effective length of query: 569
Effective length of database: 971
Effective search space:   552499
Effective search space used:   552499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)