BAC Information

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BAC

Clone NameMSMg01-165O08
Chromosome1 (Build37)
Map Location 47,505,267 - 47,505,961
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc39a10, EG227061
Downstream geneLOC666869, LOC546734
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165O08.T7 (MSMg01no165_o08.b1)MSMg01-165O08.TJ (MSMg01no165_o08.g1)
ACCAG363895AG363896
length7401,126
length of high quality
(start - end)		701 (38 - 738)285 (134 - 418)
definitionCHROMAT_FILE: MSMg01no165_o08.b1 PHD_FILE: MSMg01no165_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:14 2005CHROMAT_FILE: MSMg01no165_o08.g1 PHD_FILE: MSMg01no165_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAT
GGGAAGTTACTCTAATGTTTAATTTAGCTTCTTGTGAGAAAATACACTTT
TATGCAGCATGGCAAGGAACATCATATGAACCTGACATTTTACTAGAATT
TTAATGACAATTGAAAGTCTCTTTTCCAAAAAAAATTCACATTTCCATAT
TCTTATGAAAGAAGTGAGTCTTTGAAGTATATATGTCCAATTTGGATAGT
GTAGACTTATTTTCAGCCTTTTCTTTATAGAAATAGTCTTAACATTTTAA
GATGTGGAAAAAAGGGAGGAAATCTTAAGTGTTAAATTATAGTTAAAAAT
TGGCTTGTGTTAAAAACAATGTTGTTGACCAATTTAGGGTCTGTAAAATA
CATTAAGCTTTTAATTGTATGGCCTTTGTTAGTGAAGGGTTGCAGCATAA
TTGTTAGTGAGCCTTCAGAAGTGCTTCTTGGAGATAATGTTTGAATAATC
TATTGGCTGAATTTGAATAATTTATGCATGAAGCAATGTGGAGTTATAAT
TGCAATCACAGTGTTCAGTTCAGTAGCACCGAGTCATATTTGAAGTTATG
TGCCGATTACACTATGTAGCTTAGACTCTCCTTTTCATTTCGTTTTTAAC
AAAGAATTCTCAGGAAAGAAAGATGGCTCAGAGCCTGACAAAAGTTCCCA
AGTGAACTTTTAAAGGGTCCCTTTCAAAGATTTTTATTTN

NNAATTTANNNNNNAATGATGGATGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATCTCTGTTCCCCAT
TTTTTGGTAGGGTTATTTAGTTCTCTGGAGTCTAACTTCTTGAGTTTTTT
TTTTTTTATGTTGGATATTATCCCTTTATTGAATGTAGGATTGGTAAAGA
TACAGTCGCCCAAAATGGACTCTATTGCAGATGCTGGGAAATGCTTGCTG
ACAGGAGACTGATAGAGCTGTCTCCTGAGAGGATGTTCCAGAGACTGGAA
CAAATATCTTAAAGTACTTAAATTTTTAGTTACTTAAAGTAAACAAACAT
CTTAATAGTACTAAAATTTTGGTTGTAAGATTCATATATTGCAGAATGTA
CAACTCTGAAAAGAACCAGCTACTGAGATGACCTGATGTTCCATCCTTTT
GTTTCTTGATGCTGTCCAGAGACTTGTTTCCAGAACAGCTTCGGAAATTG
CAGCTGATTCCACATGATCTCACTTCATCCTACCTTTCAGATGGATCCAG
TCAGAACTTCAGTCAGGCTATGAGCCTTCTAAGCATACAGAGACTGGATA
ACAGAAGCTAAAGCTTTCTAGCTTTCTTAAGTCTAACCAGTTTTTCTAAT
ATTCCTACTCCTTCTGACCCCTTCAAAGAATTTCTCATCACCCCCCTTCA
GCATGAAGAAGCTGTGGAGAGTAGTCCTCCTAACCTCCTGGGTTTGCATG
TCTGATTATGGTTATATTATTAAACTATACATAAGTTGTCCTTTTTAGGG
ATAACTTGCTAATGGCCCTAATTTTTAACTAGCACGAATTGCATCGCTTG
CTTCCTAATTTCATTTCTCCTCCCTCTCTCCCTCTCTCCCCCCCCCCCTT
CCCCCCCCCCCTTCCTCCTTCTCTCCCCTCTCCTTCTCCTCCTCTCCCCC
CTCCCCCTCCTCCCCCCTTCCCTCCCTCCTCTGCCCCCCCCCCCCCCCCC
CTCACCCCCTTTCCCTTCCCCCCCCCTCCCCCTCACCCCCCCTCCCCCCC
CCCCTCTTCTCCCCCCCCCCCCTCCCCCCCTCCCTCTCTCCCCTCCCTCC
CTCCCCCATCCCCTTCTTCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_o08.b1 MSMg01no165_o08.b1 CHROMAT_FILE:
MSMg01no165_o08.b1 PHD_FILE: MSMg01no165_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:14 2005
         (701 letters)



>mm_chr1_47505062_47506161
          Length = 1100

 Score = 1301 bits (673), Expect = 0.0
 Identities = 691/697 (99%), Gaps = 3/697 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcatgggaagttactctaatgtttaatttagcttcttgtgagaaaatacactttta 65
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatgggaagttattctaatgtttaatttagcttcttgtgagaaaatacactttta 265

                                                                       
Query: 66  tgcagcatggcaaggaacatcatatgaacctgacattttactagaattttaatgacaatt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 266 tgcagcatggcaaggaacatcatatgaacctgacattttactagaattttaatgataatt 325

                                                                       
Query: 126 gaaagtctcttttccaaaaaaaattcacatttccatattcttatgaaagaagtgagtctt 185
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaaagtctcttttcc-aaaaaaattcacatttccatattcttatgaaagaagtgagtctt 384

                                                                       
Query: 186 tgaagtatatatgtccaatttggatagtgtagacttattttcagccttttctttatagaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgaagtatatatgtccaatttggatagtgtagacttattttcagccttttctttatagaa 444

                                                                       
Query: 246 atagtcttaacatt-ttaagatgtggaaaaaagggaggaaatcttaagtgttaaattata 304
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagtcttaac-ttcttaagatgtggaaaaaagggaggaaatcttaagtgttaaattata 503

                                                                       
Query: 305 gttaaaaattggcttgtgttaaaaacaatgttgttgaccaatttagggtctgtaaaatac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gttaaaaattggcttgtgttaaaaacaatgttgttgaccaatttagggtctgtaaaatac 563

                                                                       
Query: 365 attaagcttttaattgtatggcctttgttagtgaagggttgcagcataattgttagtgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attaagcttttaattgtatggcctttgttagtgaagggttgcagcataattgttagtgag 623

                                                                       
Query: 425 ccttcagaagtgcttcttggagataatgtttgaataatctattggctgaatttgaataat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ccttcagaagtgcttcttggagataatgtttgaataatctattggctgaatttgaataat 683

                                                                       
Query: 485 ttatgcatgaagcaatgtggagttataattgcaatcacagtgttcagttcagtagcaccg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttatgcatgaagcaatgtggagttataattgcaatcacagtgttcagttcagtagcaccg 743

                                                                       
Query: 545 agtcatatttgaagttatgtgccgattacactatgtagcttagactctccttttcatttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtcatatttgaagttatgtgccgattacactatgtagcttagactctccttttcatttc 803

                                                                       
Query: 605 gtttttaacaaagaattctcaggaaagaaagatggctcagagcctgacaaaagttcccaa 664
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 804 gtttttaacaaagaattctcaggaaaaaaagatggctcagagcctgacaaaagttcccaa 863

                                                
Query: 665 gtgaacttttaaagggtccctttcaaagatttttatt 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 864 gtgaacttttaaagggtccctttcaaagatttttatt 900


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1100
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1090
Effective search space:   753190
Effective search space used:   753190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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