BAC Information

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BAC

Clone NameMSMg01-166C13
Chromosome1 (Build37)
Map Location 179,100,973 - 179,199,734
singlet/doubletdoublet
Overlap geneAkt3
Upstream genePld5, Cep170, Sdccag8, LOC666235
Downstream geneZfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166C13.T7 (MSMg01no166_c13.b1)MSMg01-166C13.TJ (MSMg01no166_c13.g1)
ACCAG364071AG364072
length745726
length of high quality
(start - end)		612 (47 - 658)332 (77 - 408)
definitionCHROMAT_FILE: MSMg01no166_c13.b1 PHD_FILE: MSMg01no166_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:34 2005CHROMAT_FILE: MSMg01no166_c13.g1 PHD_FILE: MSMg01no166_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,100,973 - 179,101,580)(179,199,403 - 179,199,734)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCAGGCAAACTAGTCAGCAATACTGGAAGCTAAAGGAAACAGGC
TTTTTTTCTATGTATAGAAACTGTCCTCTCTACTAACACTGCCATTTCAG
AATTTCTGAGGTCTGACAGTGCAATCAGGGTGTTTTTCAGAAAACAGAAA
ACCACACTTAAACTTGTAGAAAGTCAAGTAAGTTAGGAACCATCAGCCTG
AAACTTTAATGGGAGCAAGACAGCTGCCTGAATGGATGGGTGTGGTCAGA
GTGAGAAAGGAAGCAAGTTTTCACTAGGAATTAAGTTGAATTATCCAACA
AGTTTGATAGCTCTCGATATTTGGAATTACCAAATATGTCAAATATGTTT
TTGAATAACAACCCCACACCCTAGTAAATAAATATGAAACATTATTATTA
ACGGTGACTTTACAGAGTTGCTAGATATCTCACGCTGGTTCATTAAAAAG
CATAAAAGGGGCTTATAATGAAATAAATGTAAGTTCAAATGAATTAAAGA
ATAAATACCAATAAGAAGACAATCACTACTCTCAACAACTATATGATGCC
ACAGCTATTGTTCTGTGCATTTGCCAATCAATATTGTTATGGAGTCCTAC
AAAGACTCCAGCGCACCAGACTGTAGCTAATTATGTATATTTAAGTGATT
AGCAAGCACTTGTTGCCTCTTTTTCATCACCCTCCCAACAGAAGT

GAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTGTCTCAGTTGGGCTTAAC
ACGCACAAACCTCAACACACCCAGCATAATCTTCTTTGTAGTTTTAGCCT
TTTTCTTCCAGAAAATAGGCTTAGACTGCCCACCAAAGCCACTGTGTTTC
CTGTCCCAAGCTTGCCTCCCCTGGGGAGACGGGGCATCCTTGCCCTTTGT
GTACTGTGTCATTTCATCAGGCTGGTACTTGCCATACTTCTTGCAGAAAA
CCCAGCATTCTTTAGGAATGTTCTCCATAATGGCAGAAGAATATCACCTC
AGAAATAGAGAGGGAGAGCCAAAAACAGAAACACTGATAATCTTCTTTTT
AATAGGAACCACCCCCCTGAAGTTTCAACAGAGTTTTCAAGATATAAAAG
GGACTATTTTTCAAACAACCCTATTATGAAGAAAAATAGGATTTAGATAC
ATTTTTTTATTGTATGGATATAAAATAATGGAAAAAATGCCCAAATAAAT
GACACTAGCCAGGAAGGTTGTTTTCCCCAATCCTTGGGGCAAGGAAATTG
GATATTTTCGCCCCTCTTTTGACCACGTGTACTTATCCTTCCAAGATCTT
TGCTCAATAAAATTCCCCAAAAATATATAATCTCTCTTATTATTCATATC
GCACCTTTTATTTTTTTCTATTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_c13.b1 MSMg01no166_c13.b1 CHROMAT_FILE:
MSMg01no166_c13.b1 PHD_FILE: MSMg01no166_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:34 2005
         (612 letters)



>mm_chr1_179100769_179101780
          Length = 1012

 Score = 1152 bits (596), Expect = 0.0
 Identities = 605/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaggcaaactagtcagcaatactggaagctaaaggaaacaggctttttttcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggcaaactagtcagcaatactggaagctaaaggaaacaggctttttttcta 264

                                                                       
Query: 65  tgtatagaaactgtcctctctactaacactgccatttcagaatttctgaggtctgacagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtatagaaactgtcctctctactaacactgccatttcagaatttctgaggtctgacagt 324

                                                                       
Query: 125 gcaatcagggtgtttttcagaaaacagaaaaccacacttaaacttgtagaaagtcaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcaatcagggtgtttttcagaaaacagaaaaccacacttaaacttgtagaaagtcaagta 384

                                                                       
Query: 185 agttaggaaccatcagcctgaaactttaatgggagcaagacagctgcctgaatggatggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agttaggaaccatcagcctgaaactttaatgggagcaagacagctgcctgaatggatggg 444

                                                                       
Query: 245 tgtggtcagagtgagaaaggaagcaagttttcactaggaattaagttgaattatccaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtggtcagagtgagaaaggaagcaagttttcactaggaattaagttgaattatccaaca 504

                                                                       
Query: 305 agtttgatagctctcgatatttggaattaccaaatatgtcaaatatgtttttgaataaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtttgatagctctcgatatttggaattaccaaatatgtcaaatatgtttttgaataaca 564

                                                                       
Query: 365 accccacaccctagtaaataaatatgaaacattattattaacggtgactttacagagttg 424
           | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctcagaccctagtaaataaatatgaaacattattattaacggtgactttacagagttg 624

                                                                       
Query: 425 ctagatatctcacgctggttcattaaaaagcataaaaggggcttataatgaaataaatgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctagatatctcacgctggttcattaaaaagcataaaaggggcttataatgaaataaatgt 684

                                                                       
Query: 485 aagttcaaatgaattaaagaataaataccaataagaagacaatcactactctcaacaact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aagttcaaatgaattaaagaataaataccaataagaagacaatcactactctcaacaact 744

                                                                       
Query: 545 atatgatgccacagctattgttctgtgcatttgccaatcaatattgttatggagtcctac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atatgatgccacagctattgttctgtgcatttgccaatcaatattgttatggagtcctac 804

                   
Query: 605 aaagactc 612
           ||||||||
Sbjct: 805 aaagactc 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_c13.g1 MSMg01no166_c13.g1 CHROMAT_FILE:
MSMg01no166_c13.g1 PHD_FILE: MSMg01no166_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:34 2005
         (332 letters)



>mm_chr1_179199203_179199934
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 330/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgtgtctcagttgggcttaacacgcacaaacctcaacacacccagcataatcttctt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tcttgtgtctcatttgggcttaacacgcacaaacctcaacacacccagcataatcttctt 473

                                                                       
Query: 61  tgtagttttagcctttttcttccagaaaataggcttagactgcccaccaaagccactgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgtagttttagcctttttcttccagaaaataggcttagactgcccaccaaagccactgtg 413

                                                                       
Query: 121 tttcctgtcccaagcttgcctcccctggggagacggggcatccttgccctttgtgtactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tttcctgtcccaagcttgcctcccctggggagacggggcatccttgccctttgtgtactg 353

                                                                       
Query: 181 tgtcatttcatcaggctggtacttgccatacttcttgcagaaaacccagcattctttagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgtcatttcatcaggctggtacttgccatacttcttgcagaaaacccagcattctttagg 293

                                                                       
Query: 241 aatgttctccataatggcagaagaatatcacctcagaaatagagagggagagccaaaaac 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aatgttctccatattggcagaagaatatcacctcagaaatagagagggagagccaaaaac 233

                                           
Query: 301 agaaacactgataatcttctttttaataggaa 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 agaaacactgataatcttctttttaataggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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