BAC Information

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BAC

Clone NameMSMg01-166C21
Chromosome1 (Build37)
Map Location 106,399,133 - 106,515,653
singlet/doubletdoublet
Overlap geneLOC383546, LOC100041134
Upstream genenone
Downstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166C21.T7 (MSMg01no166_c21.b1)MSMg01-166C21.TJ (MSMg01no166_c21.g1)
ACCAG364086AG364087
length759838
length of high quality
(start - end)		539 (43 - 581)124 (73 - 196)
definitionCHROMAT_FILE: MSMg01no166_c21.b1 PHD_FILE: MSMg01no166_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:36 2005CHROMAT_FILE: MSMg01no166_c21.g1 PHD_FILE: MSMg01no166_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,515,227 - 106,515,653)(106,399,133 - 106,399,256)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAA
TTCTGCTCTTGTTACATGCATACATTAAAAAGAGGACAGTATTGCTATTA
GGAAAGCGAGTCACTGACTAGGCATCTGTCCCAGGGCACCTACAGGTATA
TTGGTTTCTTATGACTATGGCAGCCAATTATCATTTTATTATTTTCCATT
TGTAGAGGTCAAAAGTGCAAACATATCTTTCAATGGGCCTCAAATGAGTG
AATTACTGTGATATGCTCTGTCAAAAGTCCTCAGGGGATAATTCAGTTCT
TTGTCACTTCCAGCTTCTAAGGTCTTTATCTCTTGCTCCCTGGCACCTCC
ATCTGTTCAGTGTGAATCATTCCAACCCCCTTCCACACCAGGATTGCTAA
TAAGGACTCAGTCACCACCCCCAGGGAGAGGAAAATCTTCTGGAAGGCTA
AAGCTCTGCTCATCACAGTAAGGATGATAAGCAAATAAGACCTCAAATAG
CACAGATGCCTTAGAGATTGAGACAGTGGTAGAAGTGGCCATAGCTGCTT
TGCTAGCTGATGTATCAGGAAGTCTAGCTGTCTGTGAAGTAGGTTTCTTT
GTCTGATGGACCTCAGTGTCATAATATGACCTCCAATCCACGAAGTCTTC
AGCATTCAATGTTTGTATTTCTACACGTTTGAAGTACCCAACCTTGCATT
CTGAATTCCCTGTATAGACACTTTGGTATCCCGGTTTTTTTTGTTCAATA
TCCTTTCTA

TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATCACATGCCACCGGAGAGCACTCACT
GGACTGGGGTTTATAGAAAACAAAATAAGAGAACTTAGAATGCAAAGGGG
GGTATTGGGAGTAAATAGAGTGGAGCAGAGATTTGGAGGAAGATATGATC
CACATACCCGCCGTTATCAGTTTTTTCACTATCCACGTACTATTCCCATC
CCTTTTTTTTTATCCCCGCCCCTTTCTTTTTACCCTATACCTTTCTGTTC
CCTCCCCCCCCCCTTCCCCTTTTTTTTTTTTTTAACGCAGTTGTGCCCTT
CCCGCTATCTTTTTTTATCTTCCCCCCCCCCCCCCCCTCTTTTTTTTTTC
TTCTCTCGCTGTTTATTTTTGTCCCCCCCTTTTTTTAAAAAAAATTNTAT
TGTTTTTTTTTTTCCCCCCTCTTCTCTTCTTTCCCACCCCCCTTTATTTT
TCACCTTTCTCCTTATTATTTTATCTTCTCGCCTCCTCTCCTCCTTCCCT
CATTTTTTTTACTTCTATATCTTTTTCACCTTTTCTCCCCCTACCACCTT
TTCTCTTTACCCCCTCCTATCCATCCTCCTTCTCTATTACTTTCTGCTTT
ACCCCATATCTCCCCTCAATCTTTTTCCCGCTTCCTCTCCCCCCTCCCCT
TTTTTATTCCTCCATCATCCATCGCCCTCCCCTCCTGCCTCCCCATATCC
CTCATATATTTCCGCCCCCACTACCCCTCTCTCCGCCCGTTTTTTTCTTC
ATTCTCTGCTCCCTTTTGCTTCCTTTCTATTTCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_c21.b1 MSMg01no166_c21.b1 CHROMAT_FILE:
MSMg01no166_c21.b1 PHD_FILE: MSMg01no166_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:36 2005
         (539 letters)



>mm_chr1_106514715_106515653
          Length = 939

 Score =  795 bits (411), Expect = 0.0
 Identities = 423/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 113 tttcttatgactatggcagccaattatcattttattattttccatttgtagaggtcaaaa 172
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 939 tttcttatgactatggcagccaattatcattttattattttccatttgtagatgtcaaaa 880

                                                                       
Query: 173 gtgcaaacatatctttcaatgggcctcaaatgagtgaattactgtgatatgctctgtcaa 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gtgcaaacatatctttcaatgggcctcaaatgagtgaattactgtgatatgctctgtcaa 820

                                                                       
Query: 233 aagtcctcaggggataattcagttctttgtcacttccagcttctaaggtctttatctctt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 aagtcctcaggggataattcagttctttgtcacttccagcttctaaggtctttatctctt 760

                                                                       
Query: 293 gctccctggcacctccatctgttcagtgtgaatcattccaacccccttccacaccaggat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gctccctggcacctccatctgttcagtgtgaatcattccaacccccttccacaccaggat 700

                                                                       
Query: 353 tgctaataaggactcagtcaccacccccagggagaggaaaatcttctggaaggctaaagc 412
           ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||
Sbjct: 699 tgctaataaggactcagtcactagtcccagggagaggaaaatcttctggaaggctaaagc 640

                                                                       
Query: 413 tctgctcatcacagtaaggatgataagcaaataagacctcaaatagcacagatgccttag 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tctgctcatcacagtaaggatgataagcaaataagacctcaaatagcacagatgccttag 580

                                                                       
Query: 473 agattgagacagtggtagaagtggccatagctgctttgctagctgatgtatcaggaagtc 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agattgagacagtggtagaagtggccatagctgctttgctagctgatgtatcaggaagtc 520

                  
Query: 533 tagctgt 539
           |||||||
Sbjct: 519 tagctgt 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no166_c21.g1 MSMg01no166_c21.g1 CHROMAT_FILE:
MSMg01no166_c21.g1 PHD_FILE: MSMg01no166_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:36 2005
         (124 letters)



>mm_chr1_106398933_106399456
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catcacatgccaccggagagcactcactggactggggtttatagaaaacaaaataagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcacatgccaccggagagcactcactggactggggtttatagaaaacaaaataagaga 260

                                                                       
Query: 61  acttagaatgcaaaggggggtattgggagtaaatagagtggagcagagatttggaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttagaatgcaaaggggggtattgggagtaaatagagtggagcagagatttggaggaag 320

               
Query: 121 atat 124
           ||||
Sbjct: 321 atat 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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