Query= MSMg01no167_e08.b1 MSMg01no167_e08.b1 CHROMAT_FILE:
MSMg01no167_e08.b1 PHD_FILE: MSMg01no167_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:59 2005
(681 letters)
>mm_chr1_189672234_189673314
Length = 1081
Score = 1170 bits (605), Expect = 0.0
Identities = 659/677 (97%), Gaps = 2/677 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgccaattccaacaaaacctttttcagaaaatacatgaagatagaatatttgc 64
|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 205 gaattcatgccaattctaacaaaacctctttcagaaaatacatgaagatagaatatttcc 264
Query: 65 gaatttgacttatgacttcccaagagtgactttgacttctaaagaggaactccaaagcag 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gaatttgacttatgacttcccaagagtgactttgacttctaaagagggactccaaagcag 324
Query: 125 aaaccaggtaaacctgagaataaaacaaaatggaataacaacaaaaaaaaggaaaatgat 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 aaaccaggtaaacctgagaataaaacaaaatggaataacaac-aaaaaaaggaaaatgat 383
Query: 185 aagataaagaaaactacaaacctttctgaagaactacaaagtggctttgcaaaactggct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aagataaagaaaactacaaacctttctgaagaactacaaagtggctttgcaaaactggct 443
Query: 245 cagtactcggaatttccacaagtcattctaacattagtgttaaaatattccacaaattca 304
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 444 cagtactcggaatttccacaagtcattctaacattagtgttaaaatatttcacaaattca 503
Query: 305 tactagttgatacagaaaataatatttgctgaattttcaagtctcatggggaaaaaagtg 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 tactagttgatacagaaaataatatttgctgaattttcaagtctcatgggaaaaaaagtg 563
Query: 365 cctttgaaataagaatagaaaaaaaaaacctacctaaaatgttaaacacatctctaaaat 424
|||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 cctttgaagtaagaatag-aaaaaaaaatctacctaaaatgttaaacacatctctaaaat 622
Query: 425 tagaaacaaaacaaaggtcatccgtttataaaaccctgattcaccattgtgatccaccaa 484
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 623 tagaaacaaaacaaaggtcatccatttataaaaccctgattcaccattgtgatccaccga 682
Query: 485 tgtttgaggctggactgagggctcaggcagttaagagcaattgttcttccaaaggacaag 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 683 tgtttgaggctggactgagggctcaggcagttaagagcaattgttcttcctaaggacaag 742
Query: 545 agtttgggtcccagatctctgatgtggtggctcacagctgcccataagtccagctccagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agtttgggtcccagatctctgatgtggtggctcacagctgcccataagtccagctccagg 802
Query: 605 gcattcagcaccttcttctggcctccaagggtacctgtgcacatgtgcacgtgcacacgc 664
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 803 gcattcagcaccttcttctggcctccaagagtacctgtgcacatgtgcacatgcacacac 862
Query: 665 gcacacacatacacaca 681
|||||||| |||||||
Sbjct: 863 acacacacacacacaca 879
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space: 718641
Effective search space used: 718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_e08.g1 MSMg01no167_e08.g1 CHROMAT_FILE:
MSMg01no167_e08.g1 PHD_FILE: MSMg01no167_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:59 2005
(632 letters)
>mm_chr1_189756667_189757699
Length = 1033
Score = 1178 bits (609), Expect = 0.0
Identities = 627/633 (99%), Gaps = 1/633 (0%)
Strand = Plus / Minus
Query: 1 caaggtttgtaccaggacagagcagagcaaggccaggggaactaagctgccttgagcagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 caaggtttgtaccaggacagagcagagcaaggccaggggaactaagctgccttgagcagg 774
Query: 61 acagctcgaaactatggcatcaaagacacatattcacaaggactaggaagctgacattgg 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 acagctcgcaactatggcatcaaagacacatattcacaaggactaggaagctgacattgg 714
Query: 121 atctgaacgggtatcattcatgaagcacacaaggaataaggacgtgcagagaacatgacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 atctgaacgggtatcattcatgaagcacacaaggaataaggacgtgcagagaacatgacc 654
Query: 181 tgaccatgttctggaaaactttcaccgacggacattacagaagcttttccagttcttcac 240
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 653 tgaccatgttctggaaaactttcaccgacggacattacggaagcttccccagttcttcac 594
Query: 241 aagagaagcacgcagtggaagatgccacttcagcctgagtcaggagtgatgctaccaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aagagaagcacgcagtggaagatgccacttcagcctgagtcaggagtgatgctaccaatg 534
Query: 301 caccca-ggggatgttttcttagccttagcaaacgatgctttcaatggagaaactgatca 359
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 533 cacccagggggatgttttcttagccttagcaaacgatgctttaaatggagaaactgatca 474
Query: 360 gtggcagctcattctgatgccactgcccaggagctttcatcaggcgactctgcaaaccca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gtggcagctcattctgatgccactgcccaggagctttcatcaggcgactctgcaaaccca 414
Query: 420 gcctctcctgctgcttctgctacagccataagctcttcctttgcaaaatcagagtggtgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcctctcctgctgcttctgctacagccataagctcttcctttgcaaaatcagagtggtgg 354
Query: 480 agacagactccagactttcaacatggccaatccccagacagatctcgaagtcctcctgca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agacagactccagactttcaacatggccaatccccagacagatctcgaagtcctcctgca 294
Query: 540 ctcaacctgatttagcatttgtactcaacatccacctccaacgttccttcccccttaaag 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctcaacctgatttagcatttgtactcaacatccacctccaacgttccttcccccttaaag 234
Query: 600 atgcttcatccattctttgggaatttcctacaa 632
|||||||||||||||||||||||||||||||||
Sbjct: 233 atgcttcatccattctttgggaatttcctacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
