Query= MSMg01no167_k02.b1 MSMg01no167_k02.b1 CHROMAT_FILE:
MSMg01no167_k02.b1 PHD_FILE: MSMg01no167_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:26 2005
(678 letters)
>mm_chr1_7702949_7704026
Length = 1078
Score = 275 bits (142), Expect = 1e-77
Identities = 154/158 (97%)
Strand = Plus / Plus
Query: 521 gaagtgtgtctatttcattgtagaataaacacaaccttttgatattctttctcttgacat 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaagtgtgtctatttcattgtagaataaacacaaccttttgatattctttctcttgacat 780
Query: 581 aatttacccttttatgttgacctacatgcagctcatatctggagacaaagacacaagaca 640
||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 781 aatttacccttttatattgacctacatgcagctcaaatctcgagacaaagacacaagaca 840
Query: 641 ccatctttttttgttgattaccagaatctggcttgaaa 678
||||||||||||||||||||||||||| ||||||||||
Sbjct: 841 ccatctttttttgttgattaccagaatttggcttgaaa 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1078
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1068
Effective search space: 713424
Effective search space used: 713424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no167_k02.g1 MSMg01no167_k02.g1 CHROMAT_FILE:
MSMg01no167_k02.g1 PHD_FILE: MSMg01no167_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:27 2005
(596 letters)
>mm_chr1_7860743_7861738
Length = 996
Score = 934 bits (483), Expect = 0.0
Identities = 500/507 (98%), Gaps = 5/507 (0%)
Strand = Plus / Minus
Query: 1 actttttggaaaagacaacagatcaaaatgcaggaataccaaggcagaaatgagaataga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 actttttggaaaagacaacagatcaaaatgcaggaataccaaggcagaaatgagaataga 449
Query: 61 gcaaaataaaaataaataaattaaaaaaaaaa---caaacaaacgacaaaacttcattgg 117
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 gcaaaataaaaataaataaattaaaaaaaaaaaaccaaacaaacgacaaaacttcattgg 389
Query: 118 gtcaggctgtcatctcctacttctagaaaaagaatactgaaatggaagtttctggtagtg 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtcaggctgtcatctcctacttctagaaaaagaatactgaaatggaagtttctggtagtg 329
Query: 178 ttatgccatgcagactaatgtgatgttttgctgaagcaagacccatgaatagacatgtga 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ttatgccatgcagactaatgtgatgttttgctgaagcaagacccatgaatagacatgtga 269
Query: 238 catttggaaagaatataaacaggattcaacagacaacatccaacagacagtgaaagcgca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catttggaaagaatataaacaggattcaacagacaacatccaacagacagtgaaagcgca 209
Query: 298 tttgcatacccagctttgcaacagttttgtggattctgcatcttcgctgatttt-cactt 356
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 208 tttgcatacccagctttgcaacagttttgtggattctgcatcttcattgatttttcactt 149
Query: 357 cattcagagaggtacagcagagaactgctcctggcttcccaggtagtgcttcttgctccc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 cattcagagaggtacagcagagaactgctcctggcttcccaggtagtgcttcttgctccc 89
Query: 417 aatgctgatttggaaaaggcctggatagtgggctaggaggtattgaaacatttgagaacc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 aatgctgatttggaaaaggcctggatagtgggctaggaggtattgaaacatttgagaacc 29
Query: 477 cttattaaaagtatgtttaaaanaaaa 503
|||||||||||||||||||||| ||||
Sbjct: 28 cttattaaaagtatgtttaaaa-aaaa 3
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
