BAC Information

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BAC

Clone NameMSMg01-167K05
Chromosome1 (Build37)
Map Location 81,369,706 - 81,469,137
singlet/doubletdoublet
Overlap genenone
Upstream geneEG620899, 1700016L21Rik, Dock10, LOC665092, 9430031J16Rik
Downstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167K05.T7 (MSMg01no167_k05.b1)MSMg01-167K05.TJ (MSMg01no167_k05.g1)
ACCAG365058AG365059
length726733
length of high quality
(start - end)		682 (45 - 726)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no167_k05.b1 PHD_FILE: MSMg01no167_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:27 2005CHROMAT_FILE: MSMg01no167_k05.g1 PHD_FILE: MSMg01no167_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,369,706 - 81,370,384)(81,468,694 - 81,469,137)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCTAGTGACCCTGAAAACTGACCCAATGCCCACTCCCCTCTAGTA
CATATCCTCTATCCCTGTCCTCAACCTCTGCCAAGTCACTTTCTTAAAGA
AGGACTTTGATCATTAAGCATGTACAAATCAGCCATGATAAGAAGCACTA
TTTAGGAACAATTTGAAAATGCAGTAGATAATCTGTTCCTATATCATTTG
TCACTTACAAACTGACCTCCGATGTGTGCTTGCTTCAGCAATCTCTCACA
GGACATAGTGTATTCTCTTAGTTTCAATTTACTGTCTAACGCATAGCAGG
TTAATAAAGTATGCTTCCTATATCAATAATGTTCCATGCCCTTTCAACTT
TAATTCCTATCATAATTATTATTTCAATAATTATAGAACTATACCCTAAT
AGGTGAAGGTTTTTATAGTCCTCATTTCAGTTGTTTTACCTTTCCCAGGC
AATGTAATCTTGCTTACAACATTCACAGTCAATTTGAAAATAGACAGGTC
TGGTAGAGCTAAAGTCCCAGAAATTTCTAAACAAATATTTTGATTTTGTT
TACACATGTGTCACCAGCTGTTTCAAGAAATACTGGGGAAGAAAAGAAAG
AAAACTACAGAGGAAGAAACCCATATCATAAACACCTGCATTTAAACACT
CAACAAAAAGCCAGGAAGTAAGCAGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCAATGCCACTTGATATTACTT
AGTCTTATGTTTGTGCTACTATTTAAATCTCAGGCATATACTTTTATTAT
TTTCATATTTATTTGAATATTAGATACTTGTAAATTCAAAGTGAATGAAT
TCTGAGATTTCATAAGGTACAGAAAAATAGGCAACCACTGAAGATGCAAA
CTGAAATGGTACCTGTAATGGATTTGAGATATGTAACACAATATGTTAAG
CTCTTATTTATTTCTAGGTGACAACAAATATTGTCTCATATTACCACTGT
GATAATCTGTGCATAAATGCCAAAGCTCTGGTTAGCTTTATTCTGCATCT
TTTTTCAAGGGATATCATTACAAGACTCAGGGCCCTTTTCCATGCACTTT
AACTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTCATTCATTTTATATTTGTGAGTACGTGTCATTG
TCTTCAGACACACCAGAAGAGGGCATCAGACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_k05.b1 MSMg01no167_k05.b1 CHROMAT_FILE:
MSMg01no167_k05.b1 PHD_FILE: MSMg01no167_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:27 2005
         (682 letters)



>mm_chr1_81369503_81370584
          Length = 1082

 Score = 1297 bits (671), Expect = 0.0
 Identities = 677/679 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagctagtgaccctgaaaactgacccaatgcccactcccctctagtacatatcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagctagtgaccctgaaaactgacccaatgcccactcccctctagtacatatcc 263

                                                                       
Query: 64  tctatccctgtcctcaacctctgccaagtcactttcttaaagaaggactttgatcattaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctatccctgtcctcaacctctgccaagtcactttcttaaagaaggactttgatcattaa 323

                                                                       
Query: 124 gcatgtacaaatcagccatgataagaagcactatttaggaacaatttgaaaatgcagtag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcatgtacaaatcagccatgataagaagcactatttaggaacaatttgaaaatgcagtag 383

                                                                       
Query: 184 ataatctgttcctatatcatttgtcacttacaaactgacctccgatgtgtgcttgcttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ataatctgttcctatatcatttgtcacttacaaactgacctccgatgtgtgcttgcttca 443

                                                                       
Query: 244 gcaatctctcacaggacatagtgtattctcttagtttcaatttactgtctaacgcatagc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaatctctcacaggacatagtgtattctcttagtttcaatttactgtctaacgcatagc 503

                                                                       
Query: 304 aggttaataaagtatgcttcctatatcaataatgttccatgccctttcaactttaattcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggttaataaagtatgcttcctatatcaataatgttccatgccctttcaactttaattcc 563

                                                                       
Query: 364 tatcataattattatttcaataattatagaactataccctaataggtgaaggtttttata 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tatcataattattatttcaataattatagaactataccctaataggtgaaggtttttata 623

                                                                       
Query: 424 gtcctcatttcagttgttttacctttcccaggcaatgtaatcttgcttacaacattcaca 483
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 624 gtcctcatttcagttgttttacctttcccaggcaatgtaatcttgcatacaacattcaca 683

                                                                       
Query: 484 gtcaatttgaaaatagacaggtctggtagagctaaagtcccagaaatttctaaacaaata 543
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtcaatttgaaaatagacaggcctggtagagctaaagtcccagaaatttctaaacaaata 743

                                                                       
Query: 544 ttttgattttgtttacacatgtgtcaccagctgtttcaagaaatactggggaagaaaaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttgattttgtttacacatgtgtcaccagctgtttcaagaaatactggggaagaaaaga 803

                                                                       
Query: 604 aagaaaactacagaggaagaaacccatatcataaacacctgcatttaaacactcaacaaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aagaaaactacagaggaagaaacccatatcataaacacctgcatttaaacactcaacaaa 863

                              
Query: 664 aagccaggaagtaagcaga 682
           |||||||||||||||||||
Sbjct: 864 aagccaggaagtaagcaga 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_k05.g1 MSMg01no167_k05.g1 CHROMAT_FILE:
MSMg01no167_k05.g1 PHD_FILE: MSMg01no167_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:27 2005
         (625 letters)



>mm_chr1_81468562_81469586
          Length = 1025

 Score =  812 bits (420), Expect = 0.0
 Identities = 438/444 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   caatgccacttgatattacttagtcttatgtttgtgctactatttaaatctcaggcatat 63
           ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 576 caatgccacttgatactacttagtctcatgtttgtgctactatttaaatctcaggcatat 517

                                                                       
Query: 64  acttttattattttcatatttatttgaatattagatacttgtaaattcaaagtgaatgaa 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acttttattattttcgtatttatttgaatattagatacttgtaaattcaaagtgaatgaa 457

                                                                       
Query: 124 ttctgagatttcataaggtacagaaaaataggcaaccactgaagatgcaaactgaaatgg 183
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 456 ttctgagatttcataaggtacagaaatataggcaaccactgaagatgcaaactgaaatgg 397

                                                                       
Query: 184 tacctgtaatggatttgagatatgtaacacaatatgttaagctcttatttatttctaggt 243
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 tacctgtaatggatttgagatatgtaacacaataggttaagctcttatttatttctaggt 337

                                                                       
Query: 244 gacaacaaatattgtctcatattaccactgtgataatctgtgcataaatgccaaagctct 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gacaacaaatattgtctcgtattaccactgtgataatctgtgcataaatgccaaagctct 277

                                                                       
Query: 304 ggttagctttattctgcatcttttttcaagggatatcattacaagactcagggccctttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ggttagctttattctgcatcttttttcaagggatatcattacaagactcagggccctttt 217

                                                                       
Query: 364 ccatgcactttaactttctttctttctttctttctttctttctttctttctttctttctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ccatgcactttaactttctttctttctttctttctttctttctttctttctttctttctt 157

                                   
Query: 424 tctttctttctttctttctttctt 447
           ||||||||||||||||||||||||
Sbjct: 156 tctttctttctttctttctttctt 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 136
Number of extensions: 50
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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