TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCCTGTTGTCAGATATTTAACAGTTTGTTTTTTGCTTTTGTTAGACAG
GAATGAAGTGATCGTTTTACTAGTGTACAATGGTAAAGATGAACAATTGA
GGAGACTAAAATGCTTTCTTTTGTTCAGCTGTAGATTCCATAGATAATTG
TAATGCACACCTTTTGGTATCCAATTCTATAAACGCTCCCCTTAACCCCT
TTCTGTGCTGCTATCAGTAAGAATAAATTAATTTAATCTAAACTTGAATT
GAGTCTAAGTGTGTGCTCTTTCCCAGTGGAAAGAATGAATGCCATAATAC
AACCAGCTATACTTATTGTTTGATTTTTTCTATCTTGGTTATGTATATTT
GCTTCTTTTATTCAAATTATTTAATAAGTATACCATAATACTGTCTTAAA
GTGAAAAAAAATCATTCCTGAGTGTATTTATACAGAGTGTGTCAGCCCCT
AAATTATGTCTGTTATACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGNNCNNCNTTCTTTTTTTTTTTTTTTNTTTTTCTTTTCTTCC
TTTTTCCCTTTCTCTTCTCCTCCCCCTTTTTTTCTTCTTTTTCCTTCCCC
CCCCTTTTTTCCCTTCTTCCTTCTCTCCCG

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAGAATGTTATGCATATG
ACTTATATTAATACCCAGAGTATTAATGGTTTACATTCTCCATAAAGTGG
CAGTTGCATGAGCCTTACTCTGCCTCATGTATCAGTGGAATTTTTTCAGG
GCTCACTGCTATTAGCAAAATGACACAAAATAAATGATTTCAACAAGCAA
ACACACACATGTAGGAAAACACAAACACACACACACACAAACACAGTTAA
GGAGGGATAGAGACAGAGACAGAAAGACAGGTTGTTACAGAGAGAGACAG
AGACAAAGAGAAAGACACTGAGACTAGTACTAGTATTAGCACCTACACTG
AAACCACACCACATCCACCACAGCAACAAGATAACATGCAGAAAAATTAT
TAGTCATTGCTGCCTCCTAATATTAGTGGACTCAAATCTCGAGTAAAGAG
TCACAGACTAACAGCATGGTTGTGAAAACAGAATCCATGCTTCTGCTTAT
GTAAGAAACATACCTCATCATCAAATATGAACATTAGCTCAGATGAAAAG
GCTAGAAAATATTTTATACAAGCAAATGGACCTATGAACCAAATTGGTGC
AGTTATTCTAATATCTAACAAAATAGACAAAGACCAAAATTATTAAAAAG
AGAAAGGGAAGGACACTTTGTATTCATCAACAGA

Query= MSMg01no167_n20.g1 MSMg01no167_n20.g1 CHROMAT_FILE:
MSMg01no167_n20.g1 PHD_FILE: MSMg01no167_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:44 2005
         (654 letters)



>mm_chr1_141960916_141961970
          Length = 1055

 Score = 1013 bits (524), Expect = 0.0
 Identities = 636/704 (90%), Gaps = 50/704 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagaatgttatgcatatgacttatattaatacccagagtattaatggtttacattctc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 atgagaatgttatgcatatgacttatattaatacccggagtattaatggtttacattctc 260

                                                                       
Query: 61  cat-aaagtggcagttgcatgagccttactctgcctcatgtatcagtggaattttttcag 119
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cataaaagtggcagttgcatgagcctgactctgcctcatgtatcagtggaattttttcag 320

                                                                       
Query: 120 ggctcactgctattagcaaaatgacacaaaataaatgatttcaacaagcaaacacacaca 179
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggctcactgctattagcaaaataacacaaaataaatgatttcaaaaagcaaacacacaca 380

                                                                       
Query: 180 tgtaggaaaacacaa------------------------acacacacacacacaaacaca 215
           |||||||||||||||                        |||||||||||||||||||||
Sbjct: 381 tgtaggaaaacacaaacacacacatacacacacatacacacacacacacacacaaacaca 440

                                                                       
Query: 216 gtt-aag------------------------gagggatagagacagagacagaaagacag 250
           ||| |||                        |||||||||||||||||||||||||||||
Sbjct: 441 gttaaagagggagaccacaaacacagttaaagagggatagagacagagacagaaagacag 500

                                                                       
Query: 251 gttgttacagagagagacagagacaaagagaaagacactgagactagtactagtattagc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgttacagagagagacagagacaaagagaaagacactgagactagtactagtattagc 560

                                                                       
Query: 311 acctacactgaaaccacaccacatccaccacagcaacaagataacatgcagaaaaattat 370
           ||||||||  |||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 561 acctacaccaaaaccaaaccacattcaccccagcaacaagataacatgcagaaaaattat 620

                                                                       
Query: 371 tagtcattgctgcctcctaatattagtggactcaaatctcgagtaaagagtcacagacta 430
           |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tagtcattactgtctcctaatattagtggattcaaatctcgagtaaagagtcacagacta 680

                                                                       
Query: 431 acagcatggttgtgaaaacagaatccatgcttctgcttatgtaagaaacatacctcatca 490
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 acagcatggatgtgaaaacagaatccatgcttctgcttatgtaagaaacacacctcatca 740

                                                                       
Query: 491 tcaaatatgaacattagctcagatgaaaaggctagaaaatattttatacaagcaaatgga 550
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaatatgaatattacctcagatgaaaaggctagaaaatattttatacaagcaaatgga 800

                                                                       
Query: 551 cctatgaaccaaattggtgcagttattctaatatctaacaaaatagacaaagaccaaaat 610
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctatgaaccaaattggtatagttattctaatatctaacaaaatagacaaagaccaaaat 860

                                                       
Query: 611 tattaaaaagagaaagggaaggacactttgtattcatcaacaga 654
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tattaaaaagagaaagggaaggacactttgtattcatcaacaga 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space:   672980
Effective search space used:   672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)