CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTTGTAATACTTTAACAGTTTGTTTTTTGCTTTTGTTAGACAG
GAATGAAGTGATCGTTTTACTAGTGTACAATGGTAAAGATGAACAATTGA
GGAGACTAAAATGCTTTCTTTTGTTCAGCTGTAGATTCCATAGATAATTG
TAATGCACACCTTTTGGTATCCAATTCTATAAACGCTCCCCTTAACCCCT
TTCTGTGCTGCTATCAGTAAGAATAAATTAATTTAATCTAAACTTGAATT
GAGTCTAAGTGTGTGCTCTTTCCCAGTGGAAAGAATGAATGCCATAATAC
AACCAGCTATACTTATTGTTTGATTTTTTCTATCTTGGTTATGTATATTT
GCTTCTTTTATTCAAATTATTTAATAAGTATACCATAATACTGTCTTAAA
GTGAAAAAAAATCATTCCTGAGTGTATTTATACAGAGTGTGTCAGCCCCT
AAATTATGTCTGTTATACCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTCGTGTTTCCTCCCCTCCCTTTCTTTTGTTCCCCTTCTTTCCTTTTGCC
CTTCTTCCTCCCCCTTTTTCTTGTTGTGCCCTTTGTTTCCCCCCTCTTCC
CCGCCTCTTTCTTGTCCTCTCTTTTTCCTTTTTTCCTTCTCTTTTCTCTT
TACTTATTTCTTTTCCTCTCCTTATTTCTTCTTTATTCTTTTTCGCTCCA
TTATAATC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAGAATGTTATGCATATGACTT
ATATTAATACCCAGAGTATTAATGGTTTACATTCTCCATAAAGTGGCAGT
TGCATGAGCCTTACTCTGCCTCATGTATCAGTGGAATTTTTTCAGGGCTC
ACTGCTATTAGCAAAATGACACAAAATAAATGATTTCAACAAGCAAACAC
ACACATGTAGGAAAACACAAACACACACACACACAAACACAGTTAAGGAG
GGATAGAGACAGAGACAGAAAGACAGGTTGTTACAGAGAGAGACAGAGAC
AAAGAGAAAGACACTGAGACTAGTACTAGTATTAGCACCTACACTGAAAC
CACACCACATCCACCACAGCAACAAGATAACATGCAGAAAAATTATTAGT
CATTGCTGCCTCCTAATATTAGTGGACTCAAATCTCGAGTAAAGAGTCAC
AGACTAACAGCATGGTTGTGAAAACAGAATCCATGCTTCTGCTTATGTAA
GAAACATACCTCATCATCAAATATGAACATTAGCTCAGATGAAAAGGCTA
GAAAATATTTTATACAAGCAAATGGACCTATGAACCAAATTGGTGCAGTT
ATTCTAATATCTAACAAAATAGACAAAGACCAAAATTATTAAAAAGAGAA
AGGGAAGGACACTTTGTATTCATCAACAG

Query= MSMg01no167_o20.g1 MSMg01no167_o20.g1 CHROMAT_FILE:
MSMg01no167_o20.g1 PHD_FILE: MSMg01no167_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:49 2005
         (653 letters)



>mm_chr1_141960916_141961969
          Length = 1054

 Score = 1011 bits (523), Expect = 0.0
 Identities = 635/703 (90%), Gaps = 50/703 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagaatgttatgcatatgacttatattaatacccagagtattaatggtttacattctc 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 atgagaatgttatgcatatgacttatattaatacccggagtattaatggtttacattctc 260

                                                                       
Query: 61  cat-aaagtggcagttgcatgagccttactctgcctcatgtatcagtggaattttttcag 119
           ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 cataaaagtggcagttgcatgagcctgactctgcctcatgtatcagtggaattttttcag 320

                                                                       
Query: 120 ggctcactgctattagcaaaatgacacaaaataaatgatttcaacaagcaaacacacaca 179
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 321 ggctcactgctattagcaaaataacacaaaataaatgatttcaaaaagcaaacacacaca 380

                                                                       
Query: 180 tgtaggaaaacacaa------------------------acacacacacacacaaacaca 215
           |||||||||||||||                        |||||||||||||||||||||
Sbjct: 381 tgtaggaaaacacaaacacacacatacacacacatacacacacacacacacacaaacaca 440

                                                                       
Query: 216 gtt-aag------------------------gagggatagagacagagacagaaagacag 250
           ||| |||                        |||||||||||||||||||||||||||||
Sbjct: 441 gttaaagagggagaccacaaacacagttaaagagggatagagacagagacagaaagacag 500

                                                                       
Query: 251 gttgttacagagagagacagagacaaagagaaagacactgagactagtactagtattagc 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgttacagagagagacagagacaaagagaaagacactgagactagtactagtattagc 560

                                                                       
Query: 311 acctacactgaaaccacaccacatccaccacagcaacaagataacatgcagaaaaattat 370
           ||||||||  |||||| ||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 561 acctacaccaaaaccaaaccacattcaccccagcaacaagataacatgcagaaaaattat 620

                                                                       
Query: 371 tagtcattgctgcctcctaatattagtggactcaaatctcgagtaaagagtcacagacta 430
           |||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 tagtcattactgtctcctaatattagtggattcaaatctcgagtaaagagtcacagacta 680

                                                                       
Query: 431 acagcatggttgtgaaaacagaatccatgcttctgcttatgtaagaaacatacctcatca 490
           ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 acagcatggatgtgaaaacagaatccatgcttctgcttatgtaagaaacacacctcatca 740

                                                                       
Query: 491 tcaaatatgaacattagctcagatgaaaaggctagaaaatattttatacaagcaaatgga 550
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaatatgaatattacctcagatgaaaaggctagaaaatattttatacaagcaaatgga 800

                                                                       
Query: 551 cctatgaaccaaattggtgcagttattctaatatctaacaaaatagacaaagaccaaaat 610
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cctatgaaccaaattggtatagttattctaatatctaacaaaatagacaaagaccaaaat 860

                                                      
Query: 611 tattaaaaagagaaagggaaggacactttgtattcatcaacag 653
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tattaaaaagagaaagggaaggacactttgtattcatcaacag 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1054
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1044
Effective search space:   671292
Effective search space used:   671292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)