BAC Information

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BAC

Clone NameMSMg01-168B22
Chromosome1 (Build37)
Map Location 181,368,366 - 181,368,573
singlet/doubletsinglet
Overlap geneSmyd3
Upstream geneEfcab2, D230039L06Rik, Kif26b, LOC666354
Downstream geneLOC433941, Tfb2m, LOC100040874, 9630058J23Rik, Sccpdh, Gm1305, Ahctf1, LOC100040914, LOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168B22.T7 (MSMg01no168_b22.b1)MSMg01-168B22.TJ (MSMg01no168_b22.g1)
ACCAG365405AG365406
length828733
length of high quality
(start - end)
273 (45 - 317)231 (87 - 317)
definitionCHROMAT_FILE: MSMg01no168_b22.b1 PHD_FILE: MSMg01no168_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:07 2005CHROMAT_FILE: MSMg01no168_b22.g1 PHD_FILE: MSMg01no168_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAGATCCACCTGTCTT
TGGCTCCCGAGTGCTGGGATCACCACCACCCGGCTATGAGCCATTTTTAA
TATAAATGTAAACAGTGAGTTAATCTGGCGGTTGATTTCTTCACTTTATG
TAGTTCCCCAATAACCACAAAGATTTACAAGGTTTATTTAAAACTATACC
TCAATAGAGCAGTTAACTGACTTACGTTGACTTTCTGTGTTGATCTGGCT
GCCTCCCAGCCTCATCTTTTGTTTCTTGCATAAAATTATTCATCTGGCTC
TTAGGTTAAATGGAGTCCCANANACGAAAACCCTATAGATTTCTATTATT
ATGTTGTTCTAACCCTCTCACCCTCTAAAATAAAAAAATGTATCCGGAGT
CGGCCGGCGTTTTTCCTTTTCTCTCTATTTCCTCTGTTATGTTAGTATAT
CCCCACTCCTACTCCTCCTATTCTTGTTTTATTTCAATTTGCAGTTGATT
TTTTTCTTTATTTGCATATTTCTCCACCTTTTTATATGTTATATTATTAT
GCATTTACACCCTCCTTTCTTTTTTATCATATATCCCTTTTTTCCTTTCT
CTTTTCCATATATCGACCTTATTTTCCCAACCATTTTACCTTATTCTCCT
CTCTATCACCTCACCTTTTTTTTTCCCCGCATTCTCCCTTTTTCTTTTCA
CCTTCCCACTATCCCCTCTTTCTTCACCCACCCCCTTTTTTTTTTATTTC
CACTTATTTATTTCTCCACTCTTTTTTT
CGATGAAGTGGGAGGCCTGGNGGNCGGCCGGCTTACGCACCTAGGNGAAN
NANAGAAGGATTCCCAAAAAACAGGNCCNGANACNNCCGCAGCAGAAANN
NAACCGACTNAGCCATCTCCCTAGAACCTTAAATCAGGTTTTATAAGTCC
TCTATGCACTCAAGGCGCCGACACCAGTGGTCTTATTCTTCAGCTGATGG
CAAAGCACAGAGGTGGTGATTGGACTCCTCATGCCCTCAGCACTCATCCT
TCTGTAGTAGTGATGCTTATAATCCATTAGTGAAGATAGGCAACTTTTCA
AAGGCAGCTAGCTTATTTTTTCTGGACNGGCCCCCAANACNNNAAGAGAG
CCCCTTTTTTTTTTTCCANGAACAAANGNCCCGNATCNATTTGTNTNNGG
NTGAAGGGAAATNGAAAAATNNNTATTTAAAAATAGTGCGTGGGGAGTGA
GATTGGTTCTGAGGTCTCTGCTACTGGTGTGTCATAACATTCCGGGGACA
GAGCAAGATGACATATCTCTGTACTTGGACTTACATATTAAAACACTTAT
AGCCTGCCTTATTCTAAAGAGTTATGGATTCCGATCTGTGCTGCTATTTC
TTGATTGCCTGCGTGGAGCATTTGTGGAATGGAAGGACAGTGTTTTTTTT
TTTTAAGAGAGAAGCCGCCGGCCCCTGGAGTTAAGACTGAATAGGTCTTC
AAGGTGACACATTTATCAGTCATACTCAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_b22.g1 MSMg01no168_b22.g1 CHROMAT_FILE:
MSMg01no168_b22.g1 PHD_FILE: MSMg01no168_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:07 2005
         (231 letters)



>mm_chr1_181368151_181368781
          Length = 631

 Score =  373 bits (193), Expect = e-108
 Identities = 204/208 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  aaccgactnagccatctccctagaaccttaaatcaggttttataagtcctctatgcactc 75
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaccgacttagccatctccctagaaccttaaatcaggttttataagtcctctatgcactc 364

                                                                       
Query: 76  aaggcgccgacaccagtggtcttattcttcagctgatggcaaagcacagaggtggtgatt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 aaggcgccgacaccagtggtcttattcttcagctgatggcaaagcacagaggtggtgatt 304

                                                                       
Query: 136 ggactcctcatgccctcagcactcatccttctgtagtagtgatgcttataatccattagt 195
           ||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||
Sbjct: 303 ggactcctcatgccctcagcactcatccccctgtggtagtgatgcttataatccattagt 244

                                       
Query: 196 gaagataggcaacttttcaaaggcagct 223
           ||||||||||||||||||||||||||||
Sbjct: 243 gaagataggcaacttttcaaaggcagct 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)