BAC Information

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BAC

Clone NameMSMg01-168N05
Chromosome1 (Build37)
Map Location 148,154,877 - 148,155,180
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383571, B830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168N05.T7 (MSMg01no168_n05.b1)MSMg01-168N05.TJ (MSMg01no168_n05.g1)
ACCAG365889AG365890
length704797
length of high quality
(start - end)
308 (45 - 352)111 (253 - 363)
definitionCHROMAT_FILE: MSMg01no168_n05.b1 PHD_FILE: MSMg01no168_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:20 2005CHROMAT_FILE: MSMg01no168_n05.g1 PHD_FILE: MSMg01no168_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCATGACTAACTTTAACTCTAACCTAGCTCTGAAAGCCTCTACCTC
AACTCTTTTTTCAGTTTTGCCCTAGAATAATCACCATGTGACTATGTGAC
CTATTGGGTCTCTATAGCCTGTTTCCTCTAAAGACAGGAGATATTCTCAT
TTCTTATTTAACCTCCAGTGCTTATACTACAGATGAACATCTGACCTTCA
ATTCCTACACTAGACTAAAGAAATAGGTATGGTTCACTGGTAAGAATATC
AAACCCGTTTTTAGTTTATACTACTAAATTGTTTCCTGAACTAGCCCTTT
AAACACTCTTTTTATCCCCACCCCCCCCATAAATAGAAAGAGTGGAGTCT
GAAATGTGTTGTTTGATTTGACCAAATACAAAAGGATTTGAAGGTTTTGG
TGTAACATTATCATAGTCAGGCTATTTCCACAGTGAGACTTTGAGTCTAA
AATTAAACGGCCTACCCATTCAGGTTGTGGAAAAGACATCTCTGATAACC
CGATAATCGATCATTTTTTAACATCTTTATACGACTTATCCTGCATCATT
AACTTCACAGAGGGATAAACAGAATATTATGACAGCCACTTCTTTCCTAT
TTAGTCTCCCCCACATGACCATTGTATAGCTCATCCTTAAGCCCTCCTAC
TGTG
CTCCTTCTTTCTTTCCTTTCTCTCCCATCCACCCCCCNTTTTTTCTTTTT
NNNCCAACAATGAAAGTGAATAGAAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCAAAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGG
AAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATG
GTTAAAATCAAAAATTCAGGTGACAGCAAATGCTGGCGTGAATGTGGAAA
AAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGTTTGTACAACCAC
TCTGGAAATCCGTCTGGCGGTTCCTCATAAAACTGGGCATAGCACTACCG
GAGGATCCAGCACTTTTACTCCTGTCCCCCCCCCACCCCATGCCCTAATT
GGTAAGAAGGACACTTGTTCCCCCACGAAAAAAAAAAAATAATTTACTGT
AGCCGGATGTTGGAAAGAACCCTGATCCCCCTCAAAAAAGGAATGAATAC
AGAAAATGCGGCACATCTACCACAATGGAGTACTACTCCGCTATTACCAC
CATCGAATTCATGAACCTCCTCAGCCCCTTGTAAGGAAATAGGAAGGACT
TCACCCTGAAGTGAGGTAAACAATTTTTCCCTCGCACCCTCCCCCCAAAA
TGTACCTCACCTGGACACGCGGGCACAATAGTCCCCTATAAACCCAGCCA
TATTCCATTAAACCCCACATAATTTCATATTTCTCTCAAACATCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_n05.b1 MSMg01no168_n05.b1 CHROMAT_FILE:
MSMg01no168_n05.b1 PHD_FILE: MSMg01no168_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:20 2005
         (308 letters)



>mm_chr1_148154673_148155380
          Length = 708

 Score =  572 bits (296), Expect = e-168
 Identities = 302/304 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcatgactaactttaactctaacctagctctgaaagcctctacctcaactcttt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gaattctcatgactaactttaactctaacctagctctgaaagcctctacctcaactcttt 449

                                                                       
Query: 65  tttcagttttgccctagaataatcaccatgtgactatgtgacctattgggtctctatagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 448 tttcagttttgccctagaataatcaccatgtgactatgtgacctattgggtttctatagc 389

                                                                       
Query: 125 ctgtttcctctaaagacaggagatattctcatttcttatttaacctccagtgcttatact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctgtttcctctaaagacaggagatattctcatttcttatttaacctccagtgcttatact 329

                                                                       
Query: 185 acagatgaacatctgaccttcaattcctacactagactaaagaaataggtatggttcact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acagatgaacatctgaccttcaattcctacactagactaaagaaataggtatggttcact 269

                                                                       
Query: 245 ggtaagaatatcaaacccgtttttagtttatactactaaattgtttcctgaactagccct 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 268 ggtaagaatatcaaacccgtttttagtttagactactaaattgtttcctgaactagccct 209

               
Query: 305 ttaa 308
           ||||
Sbjct: 208 ttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)