BAC Information

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BAC

Clone NameMSMg01-169H04
Chromosome1 (Build37)
Map Location 15,338,132 - 15,338,440
singlet/doubletsinglet
Overlap geneKcnb2
Upstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169H04.T7 (MSMg01no169_h04.b1)MSMg01-169H04.TJ (MSMg01no169_h04.g1)
ACCAG366317AG366318
length726729
length of high quality
(start - end)
315 (36 - 350)34 (217 - 250)
definitionCHROMAT_FILE: MSMg01no169_h04.b1 PHD_FILE: MSMg01no169_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:08 2005CHROMAT_FILE: MSMg01no169_h04.g1 PHD_FILE: MSMg01no169_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTTA
TTTTTTAAGCTATGTCATATTACTTCTCAAATGAGACATAAAAACCAGAG
GTTATCTCTAGAGAAGAAAAACCATACTCATAAGCAGCAGCAGGTCTAAG
GAGCACAAACTCTGTGTGAATACCGTCCTAAACATAACTGTGTCAGAAAT
CCTTCATTTCACACAACCCTTGGCCAAGTAAGATTCATCACTGGGCCCAA
TTTCCACTTGAGTAAAATGTTCAAGGTTATCTAGTTAGTGTATTAATTTC
CTAAGGGTATAATAACAAAGTTCTAACAAGATTAGTGGTGCCTTAAAGTT
ATATTTATTCTCCCCACTCTCATAGAGATTAGAAATAAAAAACAAAGCAA
CCCACCATTAATTCTCACAACTCATGTGATGGGAAAAGAATAGAGTCCCA
CAAGCTAGCCTCTGATCTGTAAATATGCTCTCCCAATCTAAACACATAAA
TGAGTAGATATAAAAGTTGTTTACAAAAAAGAAACAGCAGCATATTGGGA
GCAGACAATGCAGGTCTTAGAGTGCAAAGCTAGGACCTCAGTCAGAGTGC
CACTTAGATGTCTCTTAGATGTGTTAATGAGAACTGATAGGTATATGTGT
GCTTTAGTATAATAATTTTGGCTATAGTAGAGAGGAGGCAGGGTTATCAG
TGATGAGGATGTTTATGTAGAAGATG
AACGAATGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAATTCTTGGTTAAGCTCGAACCCCAATTT
TTAAAGGGGGTAATTGGATTTCCGGAAGCCCACCTCCTGGAGTCCTTAAA
AAAAATGGAAAATAACCCCCCAACCGGATTAAGAAAAGGAAAAAACCTTT
CCCAAACCGGTGGGGGGCCTTTTGGCCAAATGGACCAGGCTTTTGGCCTA
ACGAAACCTTGGCAATTTAAGAAGGCCCCATTGGTAAATTCTGGACCTAA
CGCCCAAGGCCATGGTGGTTCGTTTTAGAAATTTCCCCCCGGGGCCCAAA
CCTCCAAGGTTTGGTGNATTTACCCCCCCCCCCAACCTTGGGGTTTTGGG
TTAAAGGGGAAGGCCTTGAACCCAAAAACAAAAAAAACGGTCTGGGGGGG
GGGCACGGCTTCACTCCAAATCCTTCCAAAAAAAATCCCCACGTTTGGCC
ACCCCAATTTGTGGAAAAGCGGCCTCTCTTCCCCGGACGGGCCTAAGCCC
CAATGGCATAACACCAAGTGACCCCAAGCGGTGCGCAATCCTTCCTGGGA
CCTTCCAATCCAATACAATGCACCCACCCGCCGGCCCTCGGACCCCCCAC
CTGTACGCCAGTTCCATACTCCCCCTGGCTCCGTATACACCCCCTCACCT
GTCCGCCCAGCGCCCGTTCTCCACTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_h04.b1 MSMg01no169_h04.b1 CHROMAT_FILE:
MSMg01no169_h04.b1 PHD_FILE: MSMg01no169_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:08 2005
         (315 letters)



>mm_chr1_15337928_15338642
          Length = 715

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagttattttttaagctatgtcatattacttctcaaatgagacataaaaaccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcagttattttttaagctatgtcatattacttctcaaatgagacataaaaaccaga 454

                                                                       
Query: 65  ggttatctctagagaagaaaaaccatactcataagcagcagcaggtctaaggagcacaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggttatctctagagaagaaaaaccatactcataagcagcagcaggtctaaggagcacaaa 394

                                                                       
Query: 125 ctctgtgtgaataccgtcctaaacataactgtgtcagaaatccttcatttcacacaaccc 184
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 393 ctctgtgtgaatactgtcctaaacataactgtgtcagaaatcctttatttcacacaaccc 334

                                                                       
Query: 185 ttggccaagtaagattcatcactgggcccaatttccacttgagtaaaatgttcaaggtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttggccaagtaagattcatcactgggcccaatttccacttgagtaaaatgttcaaggtta 274

                                                                       
Query: 245 tctagttagtgtattaatttcctaagggtataataacaaagttctaacaagattagtggt 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 273 tctagttagtgtattaatttcctaagggtacaataacaaagttctaacaagattagtggt 214

                    
Query: 305 gccttaaag 313
           |||||||||
Sbjct: 213 gccttaaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)