BAC Information

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BAC

Clone NameMSMg01-169O07
Chromosome1 (Build37)
Map Location 114,413,037 - 114,413,325
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169O07.T7 (MSMg01no169_o07.b1)MSMg01-169O07.TJ (MSMg01no169_o07.g1)
ACCAG366627AG366628
length668713
length of high quality
(start - end)
232 (437 - 668)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no169_o07.b1 PHD_FILE: MSMg01no169_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:42 2005CHROMAT_FILE: MSMg01no169_o07.g1 PHD_FILE: MSMg01no169_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGCAATTCTCACC
TGAGGAATACTGAATGGCTGAGAAACACCTGAAAAATGTTCAGCATCCTT
AATCATCCCGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACAC
CCGTCAGAATAGCTAAGATGAAAAATTCAGGTGACAGCAGATGCTGGCCA
GGATGTGGAGAAAGAAGAACACTCCTCCATTGTTGATGGGATTGCAAGCT
TGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACT
TTTTACTACTGGAGGATCCCGCAATATGTCTCCTGGGTTTANNATTAGTT
CCTGNNNCCANNGNGTCCAGAAGGACACATGCTCCACTATGTTCATAGTA
GCCTTAAATNTAATNAACAGACGCTAGAGGGAACCCAGAAGCCCCTTAAC
AGAGAAATGGATACAAAAAATGTGGTATATTTACACAATGGAGTACTATT
CAACTATTAAAAAGAATGAATTTATTAAATTCCTAGGCAAATGGTTGGAC
CTGGAGGGCATTATCCTGAGTGAGGTAACACAATCTCAAAAGAACTCAAA
TGAAATGTACTCACTGATAAGAGGATATTAGCCCAGAAACTTGGAATACC
CAAGATATAAGTTACAAT
TCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACATGTGAGTTCCAGGGGTACAG
AGACACCCTGTCTTGAAAAGAAAAGAAGAGAAGAGAAAACAAAAGAAGAG
AAAACAAAAGAAAGCAAACAGACAAAAATATTTGGACCAAGTCCAAAATT
TGAAAATACATATCTTAGAACCAATTAGGTCCATCCCTGTAGTTGTTTAA
ATTTTCCTATAGGCTGAGGTATCTATTGGAACATGTAGTCAATATCATTG
ATGGCACTGTTTTTCAAGTTTAGGAAATGTGGCCTTACTAGATTAAGTAT
GTCAATGGAAGTTGTTTTTGTGCCCCCCCCCACCCGCCCTTCATTCAATT
GTGTGTCTCTATTTAATGATTTCATTTTACTATTTGATATCTCAGTGTTT
CCACCACCACACCTGCCATGGACTAGTATCTGTCCAAGGGCCATAAGACA
AAATAAACTTTTTCTATGAGTTGTTTTCTGTCATGGTGTTCAATCACAGT
AACAGTAGAATAGGTAATACATCCCCAGAGGCAGTATGTGTGCATGTTCT
TCTGAATTTTGTCTTTGAGACACTGCCAAGGCTCTCTGAGAACAGCGTTT
TCCCACTGGGAATAAGTCTAATATCTTTGTTCAACTGTAGGTTTTAAAAA
GCCAATATCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_o07.g1 MSMg01no169_o07.g1 CHROMAT_FILE:
MSMg01no169_o07.g1 PHD_FILE: MSMg01no169_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:42 2005
         (284 letters)



>mm_chr1_114412842_114413525
          Length = 684

 Score =  513 bits (265), Expect = e-150
 Identities = 281/289 (97%), Gaps = 5/289 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgtgagttccaggggtacagagacaccctgtcttgaaaagaaa-----agaagagaa 55
           ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||
Sbjct: 196 acatgtgagttccaggggtacagagacaccctgtcttgaaaagaaaagaagagaagagaa 255

                                                                       
Query: 56  gagaaaacaaaagaagagaaaacaaaagaaagcaaacagacaaaaatatttggaccaagt 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gagaaaacaaaagaagagaaaacaaaagaaagcaaacagacaaaaatatttggaccaagt 315

                                                                       
Query: 116 ccaaaatttgaaaatacatatcttagaaccaattaggtccatccctgtagttgtttaaat 175
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 316 ccaaaatttgaaaatacatatcttagaaccaattaggtccgtccctgtagttgtttaaat 375

                                                                       
Query: 176 tttcctataggctgaggtatctattggaacatgtagtcaatatcattgatggcactgttt 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 376 tttcctataggctgaggtatctattggaacatgtagtcaatatcattgatgggactgttt 435

                                                            
Query: 236 ttcaagtttaggaaatgtggccttactagattaagtatgtcaatggaag 284
           ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 436 ttcaagtttaggaaatgtggccttactggattaagtatgtcaatggaag 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)