BAC Information

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BAC

Clone NameMSMg01-169P16
Chromosome1 (Build37)
Map Location 7,407,941 - 7,408,230
singlet/doubletsinglet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P16.T7 (MSMg01no169_p16.b1)MSMg01-169P16.TJ (MSMg01no169_p16.g1)
ACCAG366689AG366690
length721716
length of high quality
(start - end)
290 (432 - 721)40 (78 - 117)
definitionCHROMAT_FILE: MSMg01no169_p16.b1 PHD_FILE: MSMg01no169_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:48 2005CHROMAT_FILE: MSMg01no169_p16.g1 PHD_FILE: MSMg01no169_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCGCG
GAACTCCTTGACTGTAACTGTATAATCCACTGTGGGGTTGCTATCCAGCT
TGGCAGCACATGTGCCATCCCATTGGCCAGGGGTTGCACAAAGATGATTT
TAACATACTTAGTAGAAATAGAATAAAGCTCATGGAAATCTGTTTCTAAA
TATTGAAACAAGAGGATCTTCCATGGAATAAGGAACCATGGAACAGTCAT
GTACAGGACACTAGCTCAAAGAATGTTTGTCTTGTGACTGTGCATTTATA
GTGATATGAACTGAAGTTACACCTGCAAATGGTTCTAACGTGTTTACCCA
TTAATTCNTTAATTGTNTTTTCGAATNCCGGCTTTATTTTGCTCCTTAAT
TCTTCAAAGTCACTGATATAATAAAAAAAATTTGTAGCGTTTTGGGTGAA
AAGCTGCCCTCAGTGTGGAGTAAATAATACTGTTGAAGAAAGGCATCAAT
GAAAACAACAGATTAAAGAAGAAAAGAAGGCAGCCATTTTTATGCAAGTT
GAATGTAAATGAACTTGGTATTTTGTAGGCTAAGTGATTAATGGGATGAA
ATACTCTGGCTTTTGTAACAGATGGTTTCTAGAAAATGAAGCTTTCAGTC
ACTGGTCTCTGTAATGTAAACATCATATTCCTGTAACTGTAACTGTACTT
CATTCTGGCCCATGACTGAGC
AATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTATGTACCTGATT
TTTTAACAAGGTTATTTGGATCTCTGGAGCCTAACTTCTTTAGTTCTTTG
AATACATTAACCCTCTATCAAATGAAGCACTAGAAAAGACATTTCCCAAT
CGGTGGGTTGTCGTTTTGCCCTGTTGACAGGGTCCTTTTCCTTACAGAAG
CTTTGCAATTTTTCTGAGGTCCCATTTGTCTATTGTTAATGTTAGAGAAC
AAGCCATTGGGGTTCTGTTCAGGATTTTTTCCCCGGGCCCATGTGTTTGA
GACCCANCCTCTTTTTCTGNNTTACCAACTAACCGTATCTGTTTTTATGT
GGAGGTNATGATCCNNTTANACTAAAAAATGAACAAAAAGATCCGGGGGG
GGCAGTTTGCATTCTTCTGCATGTTGACCACCGGTTGAACCAGCAAAATT
TATTGAAATGCTGTCTTTTTTTTCAACTGGGTGATTCCAGCTTCTTTGCT
AAAGATCAAGTGACCAGAGTTGTGTGAGTCCATTTCTGAAACTTTAATTC
CATCCCATTGACATATCTGCCTGCTGCCGTACCCATACCATACAGATTTT
AACCACTATAACCCTGCAAAAACAGTTTGAGAACCGGGCGGACGCGGATC
CCCCCCAAAATCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p16.b1 MSMg01no169_p16.b1 CHROMAT_FILE:
MSMg01no169_p16.b1 PHD_FILE: MSMg01no169_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:48 2005
         (290 letters)



>mm_chr1_7407741_7408430
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtagcgttttgggtgaaaagctgccctcagtgtggagtaaataatactgttgaagaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtagcgttttgggtgaaaagctgccctcagtgtggagtaaataatactgttgaagaaa 260

                                                                       
Query: 61  ggcatcaatgaaaacaacagattaaagaagaaaagaaggcagccatttttatgcaagttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcatcaatgaaaacaacagattaaagaagaaaagaaggcagccatttttatgcaagttg 320

                                                                       
Query: 121 aatgtaaatgaacttggtattttgtaggctaagtgattaatgggatgaaatactctggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtaaatgaacttggtattttgtaggctaagtgattaatgggatgaaatactctggct 380

                                                                       
Query: 181 tttgtaacagatggtttctagaaaatgaagctttcagtcactggtctctgtaatgtaaac 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtaacagatggtttctagaacatgaagctttcagtcactggtctctgtaatgtaaac 440

                                                             
Query: 241 atcatattcctgtaactgtaactgtacttcattctggcccatgactgagc 290
           ||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct: 441 atcatattcctgtaactataactgtacttcgtgctggcccatgactgagc 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)