BAC Information

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BAC

Clone NameMSMg01-170B02
Chromosome1 (Build37)
Map Location 159,354,088 - 159,508,887
singlet/doubletdoublet
Overlap geneBC026585, Lztr2
Upstream geneSoat1, LOC100039026, Abl2, Tor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik
Downstream geneLOC664935, LOC100039217, 6430517E21Rik, Astn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170B02.T7 (MSMg01no170_b02.b1)MSMg01-170B02.TJ (MSMg01no170_b02.g1)
ACCAG366755AG366756
length707741
length of high quality
(start - end)
321 (45 - 365)287 (78 - 364)
definitionCHROMAT_FILE: MSMg01no170_b02.b1 PHD_FILE: MSMg01no170_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:55 2005CHROMAT_FILE: MSMg01no170_b02.g1 PHD_FILE: MSMg01no170_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,354,088 - 159,354,405)(159,508,601 - 159,508,887)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCCTTGACTACTCCTTTCACCTCATGGAAGTTCCCCACGTGCCCTT
GGTATTTCAATATTACCTGTATGAAGATGAATTCCAGTGCTATGCCTTTA
GTCTGCATCTCTTCTCTCCATTCTAGATTTTTCTATCTTGTTCTGGCTCA
TCTAAAGGTGACTTGGGAGTTAACGATTTAGAATGGGATTCATCATTTTC
TCCACTGAACACACACCCTCCTCCTGTTAACGAAATCTTAACCTATGATC
CCATTACCCGATCTTGCTATCCAGGAAGGAACTCTTTAATAGTCTCCTCC
ATGCCAGTCTGTTGCCAGCGACAAAGCTGTCCCTGTCTCTGCTCTTCACT
ATCCATGCCTCAGTTAAGGCTTTCTTTAGCTTTCACCTGGACTACAACAA
TGAGCTAACAAAGTTCCTCTGGTTTTCTACATTAAGTATGGATGCAACTA
TAACCTGCTAGTAAGTGTTCTTCTTTAGACAGTGATGTAACTTATCGAAA
ATTCTGGTCTCACCATGCTCCTGTATGACCTAAACCCCTTTCCCAGCTGT
GTATTGCATACAAGATGGTGGATGTCTTTAATATTACATTGAGTCTGCCA
TCATCTAACGTAAACATTTTTCTCTGCTCTTATTCATAGCTTAATCTTGC
CTCTAAN
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGCAAGCCCCACTGACGTAC
CAAGTATTAAACAAAGAACCAAGTTTCCGGAAGACATGCAAATGATAGTG
ACAGCATCACTGGAAAGGGAGTGAGCATGGGGGCCGAGGGGGATGTCTGG
GGGTGGGTAAGGGAAGGCTGGAACAGTGTGCACAGGGCCCCTACCGAAAT
GCTCATCTTTCATTGTACATCCCCTAGTAGCGATGCTGACAGCCGGCATA
TCTTGGGATAAGGCAGACAATGCTCCATCCCACTGTTCTAATTCTGGAAC
TGCTATGCCACCTCTTTATTATGCACCCCACCGCCGCCCAAAGCTGCTGA
TAAACAGCTGCACAGAGGCAGATATAGTGACTCCAGTCACATTCGCAAGC
TTTATTGGATCTCCAACATGGCATAAGAGGCCACGCTTACCCTGCTTGTA
TAACCGTAGTAATTTGCTCGTATGTTCCAGTCTACTGGTACACATTTTGC
CCTACTCTGTCTTCCCCCTACCCTGTTTATACGTTCCTTCCTGATCTCAC
AAATTCTCGGCTATACTGCCTTCCTTCTTTATATACCCTCCTTGTCGACC
TGCGTAATAAAAGATTTCTTGAACTTTTCCCATACCTCCCTCATCTATAC
TCGATTGACTTGGCCCAATTTTTTCCATGCCTTCCCTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_b02.b1 MSMg01no170_b02.b1 CHROMAT_FILE:
MSMg01no170_b02.b1 PHD_FILE: MSMg01no170_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:55 2005
         (321 letters)



>mm_chr1_159353885_159354605
          Length = 721

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctccttgactactcctttcacctcatggaagttccccacgtgcccttggtattt 63
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctccttgactactcctctcacctcatggaagttccccacgtgcccttggtattt 263

                                                                       
Query: 64  caatattacctgtatgaagatgaattccagtgctatgcctttagtctgcatctcttctct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caatattacctgtatgaagatgaattccagtgctatgcctttagtctgcatctcttctct 323

                                                                       
Query: 124 ccattctagatttttctatcttgttctggctcatctaaaggtgacttgggagttaacgat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 ccattctagatttttctatcttgttctggctcatctaaaggtgacttgggatttaacgat 383

                                                                       
Query: 184 ttagaatgggattcatcattttctccactgaacacacaccctcctcctgttaacgaaatc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttagaatgggattcatcattttctccactgaacacacaccctcctcctgttaacgaaatc 443

                                                                       
Query: 244 ttaacctatgatcccattacccgatcttgctatccaggaaggaactctttaatagtctcc 303
           ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaacctatgaacccattacccgttcttgctatccaggaaggaactctttaatagtctcc 503

                             
Query: 304 tccatgccagtctgttgc 321
           ||||||||||||||||||
Sbjct: 504 tccatgccagtctgttgc 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_b02.g1 MSMg01no170_b02.g1 CHROMAT_FILE:
MSMg01no170_b02.g1 PHD_FILE: MSMg01no170_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:55 2005
         (287 letters)



>mm_chr1_159508401_159509087
          Length = 687

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagcaagccccactgacgtaccaagtattaaacaaagaaccaagtttccggaagacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agaagcaagccccactgacgtaccaagtattaaacaaagaaccaagtttccggaagacat 428

                                                                       
Query: 61  gcaaatgatagtgacagcatcactggaaagggagtgagcatgggggccgagggggatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcaaatgatagtgacagcatcactggaaagggagtgagcatgggggccgagggggatgtc 368

                                                                       
Query: 121 tgggggtgggtaagggaaggctggaacagtgtgcacagggcccctaccgaaatgctcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgggggtgggtaagggaaggctggaacagtgtgcacagggcccctaccgaaatgctcatc 308

                                                                       
Query: 181 tttcattgtacatcccctagtagcgatgctgacagccggcatatcttgggataaggcaga 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tttcattgtacatcccctggtagcgatgctgacagccggcatatcttgggataaggcaga 248

                                                          
Query: 241 caatgctccatcccactgttctaattctggaactgctatgccacctc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 caatgctccatcccactgttctaattctggaactgctatgccacctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)