BAC Information

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BAC

Clone NameMSMg01-170B03
Chromosome1 (Build37)
Map Location 57,856,502 - 57,955,200
singlet/doubletdoublet
Overlap gene2810022L02Rik
Upstream geneSatb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik, 1110034B05Rik, 9430016H08Rik, LOC667339
Downstream geneKctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170B03.T7 (MSMg01no170_b03.b1)MSMg01-170B03.TJ (MSMg01no170_b03.g1)
ACCAG366757AG366758
length717714
length of high quality
(start - end)
323 (54 - 376)331 (384 - 714)
definitionCHROMAT_FILE: MSMg01no170_b03.b1 PHD_FILE: MSMg01no170_b03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:56 2005CHROMAT_FILE: MSMg01no170_b03.g1 PHD_FILE: MSMg01no170_b03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,954,889 - 57,955,200)(57,856,502 - 57,856,831)
sequence
NNAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAGGAGTTATACAGCCATAACAGAATGACATTCATT
TTGACCACAGGTCCTGGGCTTCTAGTAACACAATAATGAAAGTTGTTTCC
CAGGCATGCTGATTCTCCTTTAGCATCAGACATGCTATGACTTCTCCTTA
CTGGGGTTCAGCTTTAAAGTTCAACAGCCTAGAGCTGCCTGAAATTGATT
TACACATGGCACATTGTCAGGAAGGTGACCATTCCCCACATGTGGCTGCT
GATTAGTTAACATGTGACTTATTCGAATTGAGGCAAGAAGTGCTATATGA
AACATACACTGATTTTTTTTTGTACCCCCCCCCCACTACTTTAAAAATAA
AAAGATCTTTAGATATTGAGACCAGAAGGTATAACCAAGTGGCACAGTAC
TTGCCTGGAATATGCAAGAGCCCTATTTCAACATAACAAAAAGGAAATAC
ATTTTCATTACATGTTGAAATGATCATATTTTATATACACTGATTTAGAT
ATATTACCCAACTGAAATCAGACTTATGCTTTTTAATGTGGCTATTAGAA
AGTATAAAATTGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACT
GCTCTTCTGAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCA
CAACCATCCGTAACAAG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGTAAGTAGAGATGGTCCCCT
CTTTCTCTATGACTTCTTTTTGCCCTTGTGGATGATGCTTCCCTTCACTT
GCATCTGACTCCTGGAGAGCTTTGATGGACAGGAGGCTCTCATCTGCCTC
TTAAAGTTTCAGGTTAGAGTTGGCACTAAAGTATGAGGACTGAGGCTATT
CAGTTGGGGACATGTGGCCAAGGGATCTGAGCCACTTCTGTTCCACCCAC
ATTCCCCTTCCCATCTATATCACCCTTCCCACCCACATCTCCCTTCCAAA
CTACATCTTGGTTTCCTTGCCCCTTCTTCCCATAGCGTCATGTAAGATAC
TTTGGAGTACCACAAAAAGGAAAAAGAAAACAAAGTCTATTATAGCCATC
CTTGTAAATTGAAAGGGAATTAAGAGTTAAGAGCACGAGGCTCTAGGGCC
ATACTGCCTGGCTTTCCACTGTGGTAGTGACAGCCCTTGCACTGCTGTTG
AAGACAACCTCCAATAAGTCTGGAGGTCGGACTCTCAGTTGTAGTTCCTG
GTCAGCGTGGAATGGGAGCAGAAGGCCGAGTCAGCCAGCCTGGCCTTGCT
TCCAGCCTCCGGTTGCTTAATAATGGCGTGGTCTTATTTCTCATTCTTCT
GAGCCTCAGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_b03.b1 MSMg01no170_b03.b1 CHROMAT_FILE:
MSMg01no170_b03.b1 PHD_FILE: MSMg01no170_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:56 2005
         (323 letters)



>mm_chr1_57954781_57955503
          Length = 723

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   attctcaggagttatacagccataacagaatgacattcattttgaccacaggtcctgggc 66
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 420 attctcaggagttatacagccataacagaatgacattcactttgaccacaggtcctgggc 361

                                                                       
Query: 67  ttctagtaacacaataatgaaagttgtttcccaggcatgctgattctcctttagcatcag 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctagtaacacaataatgaaagttgtttcccaggcatgctgattctcctttagcatcag 301

                                                                       
Query: 127 acatgctatgacttctccttactggggttcagctttaaagttcaacagcctagagctgcc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 acatgctatgacttctccttactggggttcagctttaaagttcaacagcctagagctgcc 241

                                                                       
Query: 187 tgaaattgatttacacatggcacattgtcaggaaggtgaccattccccacatgtggctgc 246
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tggaattgatttacacatggcacattgtcaggaaggtgaccattccccacatgtggctgc 181

                                                                       
Query: 247 tgattagttaacatgtgacttattcgaattgaggcaagaagtgctatatgaaacatacac 306
           ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tgattagctaacatgtggcttattcgaattgaggcaagaagtgctatatgaaacatacac 121

                       
Query: 307 tgattttttttt 318
           ||||||||||||
Sbjct: 120 tgattttttttt 109


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_b03.g1 MSMg01no170_b03.g1 CHROMAT_FILE:
MSMg01no170_b03.g1 PHD_FILE: MSMg01no170_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:56 2005
         (331 letters)



>mm_chr1_57856302_57857032
          Length = 731

 Score =  584 bits (302), Expect = e-171
 Identities = 323/330 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgtcatgtaagatactttggagtaccacaaaaaggaaaaagaaaacaaagtctattat 60
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 201 agcgtcatgtaagatactttggagtaccacaaaaagaaaaaagaaaccaaagtctattat 260

                                                                       
Query: 61  agccatccttgtaaattgaaagggaattaagagttaagagcacgaggctctagggccata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccatccttgtaaattgaaagggaattaagagttaagagcacgaggctctagggccata 320

                                                                       
Query: 121 ctgcctggctttccactgtggtagtgacagcccttgcactgctgttgaagacaacctcca 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 ctgcctggctttccactgtggtagtgacagcccttgtactgctgttgaagacaacctcca 380

                                                                       
Query: 181 ataagtctggaggtcggactctcagttgtagttcctggtcagcgtggaatgggagcagaa 240
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 atgagtctggaggtcggactctcagttgtagttcccggtcagcgtggaatgggagcagaa 440

                                                                       
Query: 241 ggccgagtcagccagcctggccttgcttccagcctccggttgcttaataatggcgtggtc 300
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ggccaagtcagccagcctggccttgcttccagcctccggctgcttaataatggcgtggtc 500

                                         
Query: 301 ttatttctcattcttctgagcctcagtttg 330
           ||||||||||||||||||||||||||||||
Sbjct: 501 ttatttctcattcttctgagcctcagtttg 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)