BAC Information

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BAC

Clone NameMSMg01-170E01
Chromosome1 (Build37)
Map Location 25,519,904 - 25,520,189
singlet/doubletsinglet
Overlap geneBai3
Upstream geneCol19a1, LOC100040475, LOC665829, Lmbrd1, 4930472D16Rik, LOC669171
Downstream geneLOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170E01.T7 (MSMg01no170_e01.b1)MSMg01-170E01.TJ (MSMg01no170_e01.g1)
ACCAG366882AG366883
length742701
length of high quality
(start - end)
49 (266 - 314)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no170_e01.b1 PHD_FILE: MSMg01no170_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:09 2005CHROMAT_FILE: MSMg01no170_e01.g1 PHD_FILE: MSMg01no170_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCAAAAATTTGCGGCCGCNAAACGAANNACTACATGCTGACCCGCCNG
NGNAANTNAAGGTATTTACCACCAGCCAGGGGCANAGANCAAAAAGGNNN
CCAANNAAGCCAGGNGGGGGGTTTCACCGCCTTAACCCAGGNANNNGGGA
GGNAGAGGCAGGCAGAANNCGGAGGGCGAGGCCAGCCCGGNCNACAAAAG
GAGANCNAAGACAGCCAGGGCNANACAGAGAAACCCCGGCNCGAAAAACC
AAAACCAATTTTTTCCAAACCAAACCAAAACAAAAATGTTTCTAATTCAT
ACGTGAGGCCCTAGACCGGCAAATTTTGTAGGTTTCGCACAAGGAAAGGA
CAAGGAAACGGGATTTTTTTTTTTTCCCCCCCCCCCCCAGGNAGAAANAG
NAANANAAAGGAGAGGGAAAGAGGAAATAAACAAAGAAATAATTATTGCG
GGTGTGGGCAATAATGATAATGAAATACAAAATCCATTTCCTTCTTATCC
TGGGAATATGTCCCAGTTAGGCTTCTATTGCTGAGAAAACAAATCAATCA
TTAAACAAAAACTCTCTCGACAAAGGCAACATGAAGGAATAAAAGGGCTT
ATTTTTACTTCCTCAGATTAACACTCTGGTCCCTTAAGGTCCATATACGG
GCGGTGTACACCAAAGGCCCGCAACCCTTTATTTCTTGATTATTGAAAGC
GCACAGTCCCTCGCCAACGGCTGGCTTTGGGCGGTCTTTGCN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGTTCTCCTCTTTTAAATAACC
AAAGGACAAGTATAAAAACATGAATTTTTAACCAGAGCCTTAAACTAAGT
GAGCATAGAATATAGCAAACATTTTGTATTGTTTTTCAGGGATAATACAT
AGATCTTTATTGAATCCAAGTAGGAAAGCAGCTCAGATTAGAGTTCTCCT
GTGATCTCATTGCTGATCGTATTTCAGAATAATCAACAGCCGTTTTCTGA
CTTATGCAGGCCATGTAGGACACAACAGGAGGAGTTAAACCTCATCTTCT
GGAGTGATAAGGTTTATGTCTCCCCCCCCCCCCAGCCTTTTTCTATTTGT
GCCTCAGTTTATCCTGAACACTGACCCATAGGAGTCATCCAGTGAAGTTC
AAATTACAGGAAAGAGTTACAAAGTCATAATACCGTGGATTTGCAAATAA
GATTCTGCATCAGTCCTCTGAACTGAAAGCTCCCACTTGCCTCAAATGCA
CTGAAAAATATGTATGTTAAATTCAGTTCATATATGTTTTAATTCAGGGC
GACTTTTTCATCCTTGACCAGGATGACCGACAGGAAGAGACTATACAAGA
CAACGTCTTGAGTAGGAGACTGGTAACATTTAATACTCACCTACCGGCTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_e01.g1 MSMg01no170_e01.g1 CHROMAT_FILE:
MSMg01no170_e01.g1 PHD_FILE: MSMg01no170_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:09 2005
         (287 letters)



>mm_chr1_25519704_25520390
          Length = 687

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttctcctcttttaaataaccaaaggacaagtataaaaacatgaatttttaaccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttctcctcttttaaataaccaaaggacaagtataaaaacatgaatttttaaccaga 260

                                                                       
Query: 61  gccttaaactaagtgagcatagaatatagcaaacattttgtattgtttttcagggataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccttaaactaagtgagcatagaatatagcaaacattttgtattgtttttcagggataat 320

                                                                       
Query: 121 acatagatctttattgaatccaagtaggaaagcagctcagattagagttctcctgtgatc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatagatctttattgaatccgagtaggaaagcagctcagattagagttctcctgtgatc 380

                                                                       
Query: 181 tcattgctgatcgtatttcagaataatcaacagccgttttctgacttatgcaggccatgt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 tcattgctgatcgtatttcagaataatcaacagctgttttctgacttatgcaggccatgt 440

                                                         
Query: 241 aggacacaacaggaggagttaaacctcatcttctggagtgataagg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacacaacaggaggagttaaacctcatcttctggagtgataagg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)