BAC Information

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BAC

Clone NameMSMg01-170F14
Chromosome1 (Build37)
Map Location 139,362,444 - 139,362,730
singlet/doubletsinglet
Overlap genenone
Upstream geneKif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F14.T7 (MSMg01no170_f14.b1)MSMg01-170F14.TJ (MSMg01no170_f14.g1)
ACCAG366946AG366947
length732726
length of high quality
(start - end)
315 (46 - 360)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no170_f14.b1 PHD_FILE: MSMg01no170_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:16 2005CHROMAT_FILE: MSMg01no170_f14.g1 PHD_FILE: MSMg01no170_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGCCCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTCCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTTNANATGNCTCCGAGACCCTGGNCCTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAATACAAAGAAATAAGTATGGATCGATTCGCA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCCCTGGATGGTTTTAGCTCCCTTGTCGAAGATCATATG
ACCATAGGTGTGTGGGTTCTTTTCTAGGTCTTCAATTCTATTCCATTGGT
CTACTTTTCTGTCCTCTATACCAGCACTATGCATTTTTTATCTCCCTTGC
TCTGCTAATAAGCTTTAGCTCACGCATGGTGATTTCACCAGAGGTTCCTC
TTATCCTCTGATAACATTTTTTGCCTTTCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAGGAAAAATAGGATGACTC
AGTTACATGGGTTTTTACTTTGTGAAGGAGAAAATCAAAGTACTCCGACA
TTAAATGTCAATAATCAGGACAGACGAATGCATCATTAGTTTACCATAGG
TCATGGCCACAGCGGGAGTTAACTGCTGACTGGATGGAAAGACTGAAAGG
AACTCTCCCAGGTCTTTCTAGGAAACCAGAAGATGGACAACCAAGACTAC
GGGAAGCCTTCCAGGAAAGATGCTGGGAGCAGAGCACATTTGGACGATGG
CACCAAGTAATACTTAGGTATCCAATCANAGCCCAAGTGGAGAAGAGCTA
GAGATAGGCCAGGGCTAAGCTCACAGAACAAATATATTTATTTGGCACAC
TTTAGAGGCAGGATTGAATCTTGGTCCCCCTCTCTCAGCATGATGCTTAN
AAGGCAGCAGATTTGATAAGCATGCCCGCAGAAACATTATGTTTTATTGT
AAAGGCAAAGCTACCAGGAGTGAATTGTTGAGAAGTGTCTTAATCAGGTT
CCTTTTTTACAGCTCGAGGAGCTCTAGGTGGCTGGTACAGAGGCAGGACA
ATATTCAGCAGATATGCCCAGTGGGGAAGGTGAAGACTCCTCGCCAAGAC
TCAACATGGGGATAGATCACATTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f14.g1 MSMg01no170_f14.g1 CHROMAT_FILE:
MSMg01no170_f14.g1 PHD_FILE: MSMg01no170_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:16 2005
         (284 letters)



>mm_chr1_139362244_139362926
          Length = 683

 Score =  522 bits (270), Expect = e-153
 Identities = 282/288 (97%), Gaps = 5/288 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaaggaaaaataggatgactcagttacatgggtttttactttgtgaaggagaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaaggaaaaataggatgactcagttacatgggtttttactttgtgaaggagaaaatc 260

                                                                       
Query: 61  aaagtactccgacattaaatgtcaataatcaggacagacgaatgcatcattagtttacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagtactccgacattaaatgtcaataatcaggacagacgaatgcatcattagtttacca 320

                                                                       
Query: 121 taggtcatggccacagcgggagttaactgctgactggatggaaagactgaaaggaactct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggtcatggccacagcgggagttaactgctgactggatggaaagactgaaaggaactct 380

                                                                       
Query: 181 cccaggtctttctaggaaaccagaagatggacaaccaagactacgggaagccttccagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 cccaggtctttctaggaaaccagaagatggacaaccaagactacgggaagccttctagga 440

                                                           
Query: 241 aagatgctgggagcagagcacatttggacgatgg----caccaagtaa 284
           ||||||| ||||||||||||||||||||||||||    ||||||||||
Sbjct: 441 aagatgc-gggagcagagcacatttggacgatggttggcaccaagtaa 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)