BAC Information

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BAC

Clone NameMSMg01-170J07
Chromosome1 (Build37)
Map Location 171,730,336 - 171,881,607
singlet/doubletdoublet
Overlap geneLOC100039960, 1700084C01Rik, Hsd17b7
Upstream geneEG383613, Nuf2, Rgs5, Rgs4
Downstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170J07.T7 (MSMg01no170_j07.b1)MSMg01-170J07.TJ (MSMg01no170_j07.g1)
ACCAG367101AG367102
length730718
length of high quality
(start - end)
308 (48 - 355)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no170_j07.b1 PHD_FILE: MSMg01no170_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:34 2005CHROMAT_FILE: MSMg01no170_j07.g1 PHD_FILE: MSMg01no170_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(171,730,336 - 171,730,640)(171,881,322 - 171,881,607)
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGCGTATTGGTTCAGCCAATACATGTCACAGCCCATATTTTT
TGAATAAGCACCTTTTTGTCTGGATGTGACCAAAGAAGCAAAGACATCAA
CCTTGTATATCAAATGAAAACTAATTTTCCTGTGACCAGAACACTAATCC
AAGGGAATTAAAGAACATGAAACTCATTTATGTGTGGGATCTAAGCTAGC
CAGGATCTAAGATAGTTCCCATGGTCCAGAGTTCTAAGCCTGCTTCATGC
TCCAGCGTAGCCCATACTCATATTTGTTCAAACCACCTCAGGTTTTCAGC
CTGCCTTAATTTCTTGCCCCCCCCCCCATCAAATTCAACAGCAAGTAAGA
TATTACATACCACTACCCAAAATATGGAATATGGAAAATAGTACACATCA
TATATACAAACATATAAATAGCATTCTACATTAATGAGGTGAGGACAAAA
ATAACAGATAATCTAATTAGGTGCAGAAGAAGCACTTGTCAAAATTTAAC
ATCTTTTCATAATAAAAATTTATAACAGATTAGTTATAGGAAAAAAATCT
CTTTTTAGCTATGTGCACCAGCACGTACAGGAGCACATGTGTGTCCAGGT
GAGTGAGGATGAGTGTGTGCATGCATGAGGAAGGCACTGAGCACAAGTAA
GTGCATGCAGGTGGAAGGCCGAGGATAAAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTCTGTTTTATTCCTGATACTAGTAT
CTGCCCATGGTCAGCAAGGCCCGAGCTTTTCCAGTTTGCTGGTATTTGCA
AAGAACCTTTGTTTCTGCCTCATTTTTTTCCTAGTTATTTACATATTATC
CATATAGATTATTAGCTCTACTTGTTTTAATTATCTTTTTGTTTTCTTTG
ACTTAAAGTAAAACTTTTCTAGTTCCTTGAGTTAAAACTTAGGTTCCATA
TTTGGAAATCTTTCTTAATTGTTGCTATAAGCATTTACTTATAAGCATTT
AATTATCTATATGNTTTCTNATCCANCTCTGCCGANATTGTCCGGCATTA
TATTAATTTATGTTGAGGTTAAAAAAATGAATTATTAAGCGGATATTCAA
TGCTCATATTTTTAGAGATTTAAAAGATTGATACTGGCTGGGAAGATGAC
TTAGTGGTTGAGAGCACTGGCTGCCTGCCCTGGAACGCACTCTGTAGACC
AGGCTGGCCTTGAACTCAGAAAATCACCTGCCTCTGCCTCCCAAGTGCTG
GGACTAAAAGCATGCACTACCACTGCCCGGCTACTGGCTACTCTTTCAAA
GGACCCAGGTTTGATTCCTAGGACCATGTGGTGGCTCACAAACATCTCTA
ACTTCAGTTCTAGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_j07.b1 MSMg01no170_j07.b1 CHROMAT_FILE:
MSMg01no170_j07.b1 PHD_FILE: MSMg01no170_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:34 2005
         (308 letters)



>mm_chr1_171730133_171730840
          Length = 708

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcgtattggttcagccaatacatgtcacagcccatattttttgaataagca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctgcgtattggttcagccaatacatgtcacagcccatattttttgaataagca 263

                                                                       
Query: 64  cctttttgtctggatgtgaccaaagaagcaaagacatcaaccttgtatatcaaatgaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctttttgtctggatgtgaccaaagaagcaaagacatcaaccttgtatatcaaatgaaaa 323

                                                                       
Query: 124 ctaattttcctgtgaccagaacactaatccaagggaattaaagaacatgaaactcattta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaattttcctgtgaccagaacactaatccaagggaattaaagaacatgaaactcattta 383

                                                                       
Query: 184 tgtgtgggatctaagctagccaggatctaagatagttcccatggtccagagttctaagcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtgtgggatctaagctagccaggatctaagatagttcccatggtccagagttctaagcc 443

                                                                       
Query: 244 tgcttcatgctccagcgtagcccatactcatatttgttcaaaccacctcaggttttcagc 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 tgcttcatgctccagcgtagcccatactcagatttgttcaaaccacctcaggttttcagc 503

                
Query: 304 ctgcc 308
           |||||
Sbjct: 504 ctgcc 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_j07.g1 MSMg01no170_j07.g1 CHROMAT_FILE:
MSMg01no170_j07.g1 PHD_FILE: MSMg01no170_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:34 2005
         (286 letters)



>mm_chr1_171881217_171881902
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctctgttttattcctgatactagtatctgcccatggtcagcaaggcccgagcttttcca 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 391 cctctgttttattcctgatactagtatctgcccatggtcagcaaggcaggagcttttcca 332

                                                                       
Query: 61  gtttgctggtatttgcaaagaacctttgtttctgcctcatttttttcctagttatttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtttgctggtatttgcaaagaacctttgtttctgcctcatttttttcctagttatttaca 272

                                                                       
Query: 121 tattatccatatagattattagctctacttgttttaattatctttttgttttctttgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tattatccatatagattattagctctacttgttttaattatctttttgttttctttgact 212

                                                                       
Query: 181 taaagtaaaacttttctagttccttgagttaaaacttaggttccatatttggaaatcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 taaagtaaaacttttctagttccttgagttaaaacttaggttccatatttggaaatcttt 152

                                                         
Query: 241 cttaattgttgctataagcatttacttataagcatttaattatcta 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 cttaattgttgctataagcatttacttataagcatttaattatcta 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)