ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCTGGAAAGGGAGAGTGGAGGAAGAAAAAAGCAGAGATGGGGAAAG
GAAGGAGGGAGGGGAGAACAGAGACAGAGTCTTGGCCACTTTCCTGGGGT
TACATCCCATCTTTCTATCTTCAAAAGGCCACTTGCTGCGGCTAAGGGCT
GGAGGCATGGCTCAGAGGATAAGAGCTCACTGCACAATCATGAAGACCTG
AGTTTGGAACCCCAACACTCATGTAAAAGCCAGGTATGACAATATGCATC
TGTAACTCCAGGACTGGTTCAATGAAGGCAGCTGGTTCCTTGGGGCTTTC
TGTCCAGTCATTCTACCCCCCCCCCCCAGGTCCAGGTCCAGTGAGAGATC
TGTCTTCAAAACAAAAGAAGAAGAATGAGTGTGATGGTGCACACCTTTAC
TCCCAGCACTCAGGAGGCAGAGGTGCAAGCGGAGTCAGAGGCCAAGGCGG
GTGCAGGTGGATCTCTGCATTTCCGATCCTGCCCTATACAACGATATCCA
GCACTTCCTGCACTACCAAGAAAGACTACATACATAACTAAATGCCTTTA
TTTCCCCCTCTCCGTATGCAGAGAGGTATGTATATCTCTGACCTTCTTAC
CAGTCCCCCCCTATTTTACACCTATCTCACCAACACATCATTATTAGTAT
GCCATACCCCATTCCCTGACGCCTCTCTTCGGTTCTCCACACCCC

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAACTCTGGAACCCATGGTGGAGG
GAGACAACTAACCTGAAATTTGTCCTCTGACCTCCACAGATTGTGGCTTA
TACACTTATCACACACACACACTCACACACACTCACACACACTAAATGAG
ATTAAATAATGAAAAAACAAAAGGAGTCCATCCTCTATTGCTCTGCCTGG
GCTAGAACACGTGTATTGTGTTCATGAGCCTCTCTGGCCACGGAACAAGA
ATTTGAAATAGGAGTTCTCAAACTCTGTGGTCAATGTGATTCCTTTGAAT
TCTTAGAATTATAGTTTCCTCCCAANTCTTATGCCATTTTATCTGTCATA
TATACAGATTAGAAATGAGAACTTGAAAAGAAAAAAAAATTATTGCTCAA
AGCATTTGTCCTGCAAGTGTAAGGCCTAGTCTAAGGTTCAGATGCCCAGA
ACCAAATTAAATGCCAGGTAAACAGGGCAACTCGCTTCTAACTGCAGAAG
ACAGGGATCCTGAGGAAAGTGCTCTCAGCTGCTGGGCTACCTCTCCAGCG
TTCCCACCTCCTATGTTTTTAACCAAGGTATTTTATTGTAATCTTCATAT
GCAGCCAGTCCTAGAAGGTAGGCAGATGTTGCATAGCCTCATGGGCTACA
GCGTGTACAGTCTGTCTCCTGTT

Query= MSMg01no170_j17.b1 MSMg01no170_j17.b1 CHROMAT_FILE:
MSMg01no170_j17.b1 PHD_FILE: MSMg01no170_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:36 2005
         (307 letters)



>mm_chr1_157257815_157258521
          Length = 707

 Score =  565 bits (292), Expect = e-165
 Identities = 301/304 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttctggaaagggagagtggaggaagaaaaaagcagagatggggaaaggaagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttctggaaagggagagtggaggaagaaaaaagcagagatggggaaaggaagg 263

                                                                       
Query: 64  agggaggggagaacagagacagagtcttggccactttcctggggttacatcccatctttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agggaggggagaacagagacagagtcttggccactttcctggggttacatcccatctttc 323

                                                                       
Query: 124 tatcttcaaaaggccacttgctgcggctaagggctggaggcatggctcagaggataagag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatcttcaaaaggccacttgctgcggctaagggctggaggcatggctcagaggataagag 383

                                                                       
Query: 184 ctcactgcacaatcatgaagacctgagtttggaaccccaacactcatgtaaaagccaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcactgcacaatcatgaagacctgagtttggaaccccaacactcatgtaaaagccaggt 443

                                                                       
Query: 244 atgacaatatgcatctgtaactccaggactggttcaatgaaggcagctggttccttgggg 303
           ||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||
Sbjct: 444 atgacaatatgcatctgtaactccaggacaggggcaatgaaggcagctggttccttgggg 503

               
Query: 304 cttt 307
           ||||
Sbjct: 504 cttt 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no170_j17.g1 MSMg01no170_j17.g1 CHROMAT_FILE:
MSMg01no170_j17.g1 PHD_FILE: MSMg01no170_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:36 2005
         (286 letters)



>mm_chr1_157408770_157409455
          Length = 686

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caactctggaacccatggtggagggagacaactaacctgaaatttgtcctctgacctcca 60
           |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 601 caactctggaacccatggtggagggagacaactaacctgaaagttgtcttctgacctcca 542

                                                                       
Query: 61  cagattgtggcttatacacttatcacacacacacactcacacacactcacacacactaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cagattgtggcttatacacttatcacacacacacactcacacacactcacacacactaaa 482

                                                                       
Query: 121 tgagattaaataatgaaaaaacaaaaggagtccatcctctattgctctgcctgggctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tgagattaaataatgaaaaaacaaaaggagtccatcctctattgctctgcctgggctaga 422

                                                                       
Query: 181 acacgtgtattgtgttcatgagcctctctggccacggaacaagaatttgaaataggagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acacgtgtattgtgttcatgagcctctctggccacggaacaagaatttgaaataggagtt 362

                                                        
Query: 241 ctcaaactctgtggtcaatgtgattcctttgaattcttagaatta 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctcaaactctgtggtcaatgtgattcctttgaattcttagaatta 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)