This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
MSMg01-170K09
Chromosome
1 (Build37)
Map Location
189,806,400 - 189,948,765
singlet/doublet
doublet
Overlap gene
Esrrg
,
9330162B11Rik
Upstream gene
Spata17
,
Gpatch2
Downstream gene
Ush2a
,
Kctd3
Link
Open Mouse BAC browser
Click to get alignment info.
name
Spata17
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:74717
MGI:1921967
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Gpatch2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67769
MGI:1915019
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Esrrg
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:26381
MGI:1347056
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
9330162B11Rik
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:320272
MGI:2443717
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs
name
Ush2a
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:22283
MGI:1341292
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Kctd3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:226823
MGI:2444629
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Spata17
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141802146
GeneID:74717
MGI:1921967
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: spermatogenesis associated 17
transcript_id
: NM_028848.2
name
Gpatch2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:34328450
GeneID:67769
MGI:1915019
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: G patch domain containing 2
transcript_id
: NM_026367.3
name
Esrrg
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:52345417
GeneID:26381
MGI:1347056
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: estrogen-related receptor gamma
transcript_id
: NM_011935.2
name
9330162B11Rik
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:149247236
GeneID:320272
MGI:2443717
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs
product
: RIKEN cDNA 9330162B11 gene
transcript_id
: XM_001478165.1
name
Ush2a
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:84662723
GeneID:22283
MGI:1341292
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: Usher syndrome 2A (autosomal recessive, mild) homolog (human)
transcript_id
: NM_021408.2
name
Kctd3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:46255027
GeneID:226823
MGI:2444629
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: potassium channel tetramerisation domain containing 3
transcript_id
: NM_172650.2
name
Spata17
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:29789229
CCDS:CCDS15604.1
GeneID:74717
MGI:1921967
definition
codon_start
: 1
product
: spermatogenesis associated 17
protein_id
: NP_083124.1
name
Gpatch2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34328451
CCDS:CCDS15605.1
GeneID:67769
MGI:1915019
definition
GO_component
: GO:0005622 - intracellular [Evidence IEA]
GO_function
: GO:0003676 - nucleic acid binding [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: G patch domain containing 2
protein_id
: NP_080643.3
name
Esrrg
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6753774
CCDS:CCDS15606.1
GeneID:26381
MGI:1347056
definition
GO_component
: GO:0005634 - nucleus [Evidence NAS]
GO_function
: GO:0050682 - AF-2 domain binding [Evidence IPI]; GO:0005516 - calmodulin binding [Evidence NAS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0007275 - development [Evidence NAS]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence IDA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
note
: estrogen-related receptor 3
product
: estrogen-related receptor gamma
protein_id
: NP_036065.1
name
9330162B11Rik
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:149247237
GeneID:320272
MGI:2443717
definition
codon_start
: 1
product
: hypothetical protein LOC320272
protein_id
: XP_001478215.1
name
Ush2a
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:84662724
CCDS:CCDS15607.1
GeneID:22283
MGI:1341292
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_process
: GO:0050896 - response to stimulus [Evidence IEA]; GO:0007601 - visual perception [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
product
: usherin
protein_id
: NP_067383.2
name
Kctd3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27369936
CCDS:CCDS15608.1
GeneID:226823
MGI:2444629
definition
codon_start
: 1
product
: potassium channel tetramerisation domain containing 3
protein_id
: NP_766238.1
name
(CDS detail)
type
STS
link
xref
UniSTS:124540
definition
standard_name
: 44.MMHAP45FLG5.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:234299
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:158903
definition
standard_name
: AI430061
name
(CDS detail)
type
STS
link
xref
UniSTS:167294
definition
standard_name
: D1Ertd75e
name
(CDS detail)
type
STS
link
xref
UniSTS:234301
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:178542
definition
standard_name
: AI427714
name
(CDS detail)
type
STS
link
xref
UniSTS:165129
definition
standard_name
: AI447508
name
(CDS detail)
type
STS
link
xref
UniSTS:234300
definition
name
(CDS detail)
type
STS
link
xref
UniSTS:178543
definition
standard_name
: AW491060
name
(CDS detail)
type
STS
link
xref
UniSTS:178544
definition
standard_name
: AW107440
name
(CDS detail)
type
STS
link
xref
UniSTS:128829
definition
standard_name
: D1Mit459
name
(CDS detail)
type
STS
link
xref
UniSTS:54122
definition
standard_name
: D1S506
name
(CDS detail)
type
STS
link
xref
UniSTS:495942
definition
standard_name
: Esrrg
name
(CDS detail)
type
STS
link
xref
UniSTS:1717
definition
standard_name
: WI-12511
name
(CDS detail)
type
STS
link
xref
UniSTS:144739
definition
standard_name
: Ush2a
name
(CDS detail)
type
STS
link
xref
UniSTS:128565
definition
standard_name
: D1Mit223
name
(CDS detail)
type
STS
link
xref
UniSTS:61644
definition
standard_name
: GDB:1317552
name
(CDS detail)
type
STS
link
xref
UniSTS:128624
definition
standard_name
: D1Mit274
name
(CDS detail)
type
STS
link
xref
UniSTS:178549
definition
standard_name
: AU024699
clone name
MSMg01-392I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386L08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-416L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194I06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372J07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-260K22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-372E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-387I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-162F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273D14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-280L07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399E06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511N13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-134J09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-134J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305H12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-511C21
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-081G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082O22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-335H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-187L09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-192N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140H17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540B24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-293H11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-527O06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488C08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-496P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305M02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-529L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459B10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-469A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-071N03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167E08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-073F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-288A09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-053A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-295M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-337O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492M06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-533C06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-195H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-058B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-061O04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-360N24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-162K16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-264H06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380J08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-330I05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-332N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-522E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-547E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-358E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451P18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453K21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-159J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-232E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-527F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115G17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-149A12
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-095N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-371G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-263J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322P08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-395D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-127M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478K24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-545A23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-504B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-236P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359C11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356G21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-131J01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-466E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-165N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329H16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-431O02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-445J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465K03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-480B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-070F09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280A16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-499M24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-063F14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-345H24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-030C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029K10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-136A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-019G14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187M18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-321M19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-177D03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-198I21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-059G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-006C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-217K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-076F15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-266A03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-260N24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337C17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-076G03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-082B21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-157A14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-200A06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154C19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-011A04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-210A19
singlet/doublet
doublet
plural/unique
unique
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