BAC Information

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BAC

Clone NameMSMg01-171A20
Chromosome1 (Build37)
Map Location 116,873,503 - 116,873,811
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC227506, Cntnap5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171A20.T7 (MSMg01no171_a20.b1)MSMg01-171A20.TJ (MSMg01no171_a20.g1)
ACCAG367419AG367420
length752740
length of high quality
(start - end)
313 (46 - 358)294 (75 - 368)
definitionCHROMAT_FILE: MSMg01no171_a20.b1 PHD_FILE: MSMg01no171_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:10 2005CHROMAT_FILE: MSMg01no171_a20.g1 PHD_FILE: MSMg01no171_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAAACTGACATACTTTAGTGTTCTGAGTGAAGGTAGTAATTTTA
GATGAGCTAAAATTATAACTTAAAATGCAGTAAAAGACCATTAAGGAAAT
TAAAATGGTATAACAGAAAATATGTACTAAAGGCAATGGAAAAGAGGGAA
GACATGCACTAATAAAAAGGAAATTATATAGAGTACAAAACTGAATGGGA
AAATACAGATCTAGGTTTACTAAATTCAGAAAACTTAATTTGTTTAATTA
TCCCAAATAAAATCTTACATTGTCATTGTGGATATCAAGCATGACACTTG
CTGCAATGCTNGATAATTTGCCCCNNACGNCCAAATCCCATAGTAGAAAT
AGAGAACTGATTCCCAACTTCCATATATATGACATACCACATAAGCACAC
GCCTTCTCTCTCACACACAGTAATAAGTAAAAGTAAAATGTAAATACTGT
ATAGATGATTTAGACATAAAATCAAATTTAAAACCTTAAACAACACCATA
AATAATGAGATGTAAGAAACTACATAGAGAGATCCAAAAAACTATGGCAC
TCCACCTAAGCTAACAGCATATAATTCCTGTCAAGAACCAGCGCAACTTT
CCAGGTACCCCGGTAAACTTATTGAGAGACAAACTATGACAATATTTTAT
GTGTTCCGGGACATGATAGTCCTCCCGACTTATCGCCCTTTTTTTTTTTA
TG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGGATACCGAATGGCAGA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGATAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGTTTTTTTATCCCCCCCCGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTCCACAGCAGCCTTATATATAATAGCCAGAAG
CTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGAAACTCACACAATATGCACTCACCTGATAAGT
GGATATTAGTCCCAACTCTAGGATACCCCAGAAATAAGATATAATTTTGC
TAACCCCTGGAAACTCTAGAATAATGAAATCTGAACTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_a20.b1 MSMg01no171_a20.b1 CHROMAT_FILE:
MSMg01no171_a20.b1 PHD_FILE: MSMg01no171_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:10 2005
         (313 letters)



>mm_chr1_116873299_116874011
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaaactgacatactttagtgttctgagtgaaggtagtaattttagatgagcta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcagaaactgacatactttagtgttctgagtgaaggtagtaattttagatgagcta 454

                                                                       
Query: 65  aaattataacttaaaatgcagtaaaagaccattaaggaaattaaaatggtataacagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaattataacttaaaatgcagtaaaagaccattaaggaaattaaaatggtataacagaaa 394

                                                                       
Query: 125 atatgtactaaaggcaatggaaaagagggaagacatgcactaataaaaaggaaattatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atatgtactaaaggcaatggaaaagagggaagacatgcactaataaaaaggaaattatat 334

                                                                       
Query: 185 agagtacaaaactgaatgggaaaatacagatctaggtttactaaattcagaaaacttaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agagtacaaaactgaatgggaaaatacagatctaggtttactaaattcagaaaacttaat 274

                                                                       
Query: 245 ttgtttaattatcccaaataaaatcttacattgtcattgtggatatcaagcatgacactt 304
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 273 ttgtttaattatcccaaataaaatcttacattgccattgtggatatcaagcatgacactt 214

                    
Query: 305 gctgcaatg 313
           |||||||||
Sbjct: 213 gctgcaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)