Query= MSMg01no171_c03.b1 MSMg01no171_c03.b1 CHROMAT_FILE:
MSMg01no171_c03.b1 PHD_FILE: MSMg01no171_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:17 2005
(371 letters)
>mm_chr1_74541519_74542289
Length = 771
Score = 696 bits (360), Expect = 0.0
Identities = 366/368 (99%)
Strand = Plus / Minus
Query: 4 ggaattccaagagtgtttcaggtattctcatggccatgagaacttatccaagaaaactgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaattccaagagtgtttcaggtattctcatggccatgagaacttatccaagaaaactgg 647
Query: 64 gagctgaatatgagctcagtggctgcacttgcctagtgtgctcagaaccgtggattatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gagctgaatatgagctcagtggctgcacttgcctagtgtgctcagaaccgtggattatat 587
Query: 124 tcctaacatcacacacacacatcagggtgatctgacttgattcccctgtttttttctttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tcctaacatcacacacacacatcagggtgatctgacttgattcccctgtttttttctttg 527
Query: 184 aagtaattgctagattcatttaatgggattttttttttaagtgtcttgtagaagttagta 243
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aagtaattgccagattcatttaatgggattttttttttaagtgtcttgtagaagttagta 467
Query: 244 actatgtcctaaataatcccatcctatgtcatacattttaatagatgattgttcaggtca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 actatgtcctaaataatcccatcctatgtcatacattttaatagatgattgttcaggtca 407
Query: 304 tctttatagctttatagtttttaaaaaaagtcttgggtttgtttttgtttttttgttttt 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 406 tctttatagctttatagtttttaaaaaaagtcttgggtttgtttttgttttttttttttt 347
Query: 364 tttttttg 371
||||||||
Sbjct: 346 tttttttg 339
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space: 275844
Effective search space used: 275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_c03.g1 MSMg01no171_c03.g1 CHROMAT_FILE:
MSMg01no171_c03.g1 PHD_FILE: MSMg01no171_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:17 2005
(637 letters)
>mm_chr1_74513574_74514609
Length = 1036
Score = 1212 bits (627), Expect = 0.0
Identities = 633/635 (99%), Gaps = 1/635 (0%)
Strand = Plus / Plus
Query: 3 aattccttctttaccaaggaaacactaagtttatgatagtaactagactctaacgaagcg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aattccttctttaccaaggaaacactaagtttatgatagtaactagactctaacgaagcg 262
Query: 63 gaccccaatttttcccaatggctacacaagaagtatactgccaagaatatatccagactt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaccccaatttttcccaatggctacacaagaagtatactgccaagaatatatccagactt 322
Query: 123 taacagttggctatagcagagataagatcaccttaaggctaggcggagttcttggtctgt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taacagttggctatagcagagataagatcaccttaaggctaggcggagttcttggtctgt 382
Query: 183 taggtttaactccacccctttcttacaatggacctcaaatcttctggtgacagcccacta 242
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 taggtttaactccacccctttcttacaatggacctcaa-tcttctggtgacagcccacta 441
Query: 243 agaacaactgctctaaaaggatcaaagtttggggtggatagcattacctagagaaaactg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agaacaactgctctaaaaggatcaaagtttggggtggatagcattacctagagaaaactg 501
Query: 303 aaacaagaaatccttataaaagggggatacagatacatagaaaatcttcagtgtatgata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaacaagaaatccttataaaagggggatacagatacatagaaaatcttcagtgtatgata 561
Query: 363 acagcaggaatagtagagagaatgtgtaaaacaacaaagagacagggtagttatcttttg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acagcaggaatagtagagagaatgtgtaaaacaacaaagagacagggtagttatcttttg 621
Query: 423 atgaagccaaacagtcatcacttaaagaacagaatgtttaccaaactacaggatgaaaac 482
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atgaagccgaacagtcatcacttaaagaacagaatgtttaccaaactacaggatgaaaac 681
Query: 483 tgccaatttgctataacaaaacaaagaccatcaatatagataaattcccaccagttctaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgccaatttgctataacaaaacaaagaccatcaatatagataaattcccaccagttctaa 741
Query: 543 gctgtcacacgataagcctgactacacccccagaaactaacactctccctttctccgtct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 gctgtcacacgataagcctgactacacccccagaaactaacactctccctttctccgtct 801
Query: 603 ctcccctccccctcccacccacacacccacttatt 637
|||||||||||||||||||||||||||||||||||
Sbjct: 802 ctcccctccccctcccacccacacacccacttatt 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
