BAC Information

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BAC

Clone NameMSMg01-171F09
Chromosome1 (Build37)
Map Location 146,898,477 - 146,898,791
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs13, Rbm6-ps2, Rgs1, EG639456, Rgs21, Rgs18, LOC667877
Downstream geneLOC625057, LOC383570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171F09.T7 (MSMg01no171_f09.b1)MSMg01-171F09.TJ (MSMg01no171_f09.g1)
ACCAG367615AG367616
length733730
length of high quality
(start - end)
319 (36 - 354)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no171_f09.b1 PHD_FILE: MSMg01no171_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:32 2005CHROMAT_FILE: MSMg01no171_f09.g1 PHD_FILE: MSMg01no171_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAGA
ATGTAACTACAATTTTCTCAAAGGAGTAAAGAAGATCTTCAGATCAGAAG
AAGAATCAAAGGGGTATTTTGAATGTCTGCTGAAGGAGAACTTAAAGTCT
TGGAACAGTGTGTATGGTACACTTCAATGGTATGGAAAATCACGATGCAT
AGGGAAATCACCTGCAGCACACAGAGCTTTTTGAACAAGGTGGGTAGGTA
GGAAACTCATGTGAAGTGGATCCCTCTTCAACAGGAGAATGATAAAAGCT
ACAGATAAACATTTGATGATGCATACAAGGCAGTAACTAAAAGGATAGAA
TTCTANNTTANTTCACCANTCAGACCTGTATAAGATTCATTAAACTTTTC
AATGGTTATTCTTGTCGATGAAAACAGAAACTCAAGAGCCTTGAGAGTTA
AGCAATGCTATTGGAATGTAATCTCTTCAAACTAATATTATGTAGGAAAA
CAACTACTGAAAATATGAGTGTCCAGCATCTGTTTTGTATAGGGTGTTAA
GTTAGTATGAATTAAAGAAAATTTTGAAGGTTGTTGATTGATTATACCGA
TATTAGCCAATCATGTATAATTATTGTTTACTTTAACTCTTTTTCTATAA
ACTAGTTTTTTTGATAATATGCACATTACTGTCAAGTATACCTTTATACC
TAGTTTGTTCAACACTTTAATTTATCTCTTTTT
AATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGATTTCAAAAAATATATATATTTTA
AAATTGAAATGGAGAGATATTGGTCAGTAAAATGCTTATTTAAAAGAATA
GAAACACATTTTTGATTTCCAGATCCCAAATAAAAACAAGCCAAGTGCAG
TGGTGAACATTAATAAACCCAGGGTTGGGGAAAGGGAAATAAACGCACTC
CTGATTAGACAGTCTAACTTACTTGGTACTTTCTAAGACAGTGAGAGACT
CTGTCTCAAAATCAACAACAATCTAAACAGAGGACAATACTACAGAAATG
AAAACCATTGTTGTCCTACGACTCTCACCTGGCTATACCTACAGCACACA
TGCATACACACTTGTCTACACTTCTATACCCATTCACTCATAAACACACA
CATACACATACACACACACACACACACACACACACACACAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCCTAA
TTAAATGGAGACCATCTTAACAATGGATTTGTAACTAAATAAGAAAGCAC
TGTTTATTTAAGAAACAGGAAAAGTTGGTTGTAATATGGAGGAGAGTAGG
ATAGTATGTTTTCCCCCTTTCCGCCCCTTTTTTTCCTTCTTCCCTTCTTT
CCCCCCTCTTATTCCTTTTCCTCTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_f09.b1 MSMg01no171_f09.b1 CHROMAT_FILE:
MSMg01no171_f09.b1 PHD_FILE: MSMg01no171_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:32 2005
         (319 letters)



>mm_chr1_146898274_146898992
          Length = 719

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatagaatgtaactacaattttctcaaaggagtaaagaagatcttcagatcaga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcatagaatgtaactacaattttctcaaaggagtaaagaagatcttcagatcaga 459

                                                                       
Query: 64  agaagaatcaaaggggtattttgaatgtctgctgaaggagaacttaaagtcttggaacag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agaagaatcaaaggggtattttgaatgtctgctgaaggagaacttaaagtcttggaacag 399

                                                                       
Query: 124 tgtgtatggtacacttcaatggtatggaaaatcacgatgcatagggaaatcacctgcagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtgtatggtacacttcaatggtatggaaaatcacgatgcatagggaaatcacctgcagc 339

                                                                       
Query: 184 acacagagctttttgaacaaggtgggtaggtaggaaactcatgtgaagtggatccctctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 acacagagctttttgaacaaggtgggtaggtaggaaactcatgtgaagtggatccctctt 279

                                                                       
Query: 244 caacaggagaatgataaaagctacagataaacatttgatgatgcatacaaggcagtaact 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 caacaggagaatgataaaagctacagataaacatttgatgatgcatacaaggcagtaact 219

                          
Query: 304 aaaaggatagaattc 318
           |||||||||||||||
Sbjct: 218 aaaaggatagaattc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)