BAC Information

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BAC

Clone NameMSMg01-171L08
Chromosome1 (Build37)
Map Location 63,125,005 - 63,260,342
singlet/doubletdoublet
Overlap geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1
Upstream genePard3b, LOC667592, Nrp2, LOC100043070
Downstream gene1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842, OTTMUSG00000013918, Klf7, Ppia-ps1_583.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171L08.T7 (MSMg01no171_l08.b1)MSMg01-171L08.TJ (MSMg01no171_l08.g1)
ACCAG367863AG367864
length739890
length of high quality
(start - end)
316 (45 - 360)143 (76 - 218)
definitionCHROMAT_FILE: MSMg01no171_l08.b1 PHD_FILE: MSMg01no171_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:59 2005CHROMAT_FILE: MSMg01no171_l08.g1 PHD_FILE: MSMg01no171_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,125,005 - 63,125,313)(63,260,201 - 63,260,342)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGAACCAGCATTTGATAAGCTGAGGTCAGCTAGGAAGAGTTTCCTT
CAGAAGCACTTAGCACAAGAGAAGGAAAATAAAAAGCACTACTTCTAGTT
ATCACAGGCAGGGACATAAAGCATGGCGGGACTCAAGGCGACCCTCAGAG
TGACCGTGATCAAGTTCCAGCATGGCAGGACTCGAACCAACCCTCACAGT
GATTGTGATCAAGTGCCTTAGCTCCCTGGGTATGTTTGCCACTTTTATAA
GATGAAATTACATCAGATAATCTTCTAGATTCCTTTCAATTCTGTTATAT
TAAACATTTGNAATTGGCTCAGNTACGAAACCCATTTAGTAAAAAAAGTC
AAAGTTAACTTTGCCCCCACAAAATCTACNAAAATTCCCGGGGTGAGGGA
AGTTTGACTAACTAAACCTAATTATAGCATAGCAAAATTTAATAAAAAAC
ATTGTAACAGACAGGAAGAAAGGCAAATTGCTATATCTCCAAGAATAAAA
CCAAAAAGGGCATTTTACGCGCGGCTTTCCTGCCTGAGGAACTCTCGGAT
TGCCCTTCGCTACCGTTATTTCGTATCCTTGATTCGCTTTCTTTTTCACC
TCTCCTTTCTTCTCAACCTCTCCTATCTCTCCGTTTAACTTTCGTTCATG
TCCCGATATCTCTATCTCCCCTCTTTCATAATTATTACC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGGTTTAACTGGAATAAAAATGAC
GCTATAAGGCAGGGCTGCATGGCTTCCCCACGCAAACCCCTAGGGCCACT
AGATCTGTGTCTGTGACTCCATTTCCATCATGGGAAGATTTGCACGCTTC
CAGCCTCACCGTGCAATTAAATAAAGATCCGAACCCCCATCTAGCCCTGT
TTGCCACTAACCAGTGCATCTATGATAATTTTCCTTAAAAATGTTGTCTG
TTACTACCTTTGAACATCCCTTTTTTTTTTTTTATTTTGATTTCCTCTAT
CCTACAAACCCAAAATTTTAAGATAATTTTTCCCANAACAGAACCCCATT
ATATTTGCAATATTTATAATATTTATTTTTCCCCCCCCCCCTCAAAAAAA
AAAAAAAAATAACTTTTTTTTTGGCGCGTTTCCTCTCTTCTTATACACCT
TTTTTCTCTTCTTTCCTTCTTTTTTCTTACAACTCTCCTCATCCTTCCCT
TCCTTTTCTCTTCCCATTTTCCCTAAATTCCTATTTTTACTATTAGTAAT
CTCCCCATTATACAATTTTTATCTTTGTCCATACCCACCCTTATTCTTTT
TTTCACCTATTATAATTCAACTAGTCTGTATATTGTTTTCCACTTTTTTT
CCCCCAAATATTTCTCTTTCTTCTTATTATTTCCTCCTTTTCTCCTCTCC
TCTTTCCTCCCCTCTCTTTATATCTATTTTTTTTCTTATTTCTCCCTCCC
CCACCTCTTTTTACCGCTCCCATCTCCACCTTTTGTTTCTCGCCCCTCTC
TACTTCCACTTCTCATCCTCTCTACACACCTACATCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_l08.b1 MSMg01no171_l08.b1 CHROMAT_FILE:
MSMg01no171_l08.b1 PHD_FILE: MSMg01no171_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:59 2005
         (316 letters)



>mm_chr1_63124801_63125516
          Length = 716

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaaccagcatttgataagctgaggtcagctaggaagagtttccttcagaagca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgaaccagcatttgataagctgaggtcagctaggaagagtttccttcagaagca 264

                                                                       
Query: 65  cttagcacaagagaaggaaaataaaaagcactacttctagttatcacaggcagggacata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttagcacaagagaaggaaaataaaaagcactacttctagttatcacaggcagggacata 324

                                                                       
Query: 125 aagcatggcgggactcaaggcgaccctcagagtgaccgtgatcaagttccagcatggcag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagcatggcgggactcaaggcgaccctcagagtgaccgtgatcaagttccagcatggcag 384

                                                                       
Query: 185 gactcgaaccaaccctcacagtgattgtgatcaagtgccttagctccctgggtatgtttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactcgaaccaaccctcacagtgattgtgatcaagtgccttagctccctgggtatgtttg 444

                                                                       
Query: 245 ccacttttataagatgaaattacatcagataatcttctagattcctttcaattctgttat 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 ccacttttataagatgaaattacatcagataatcttcaagattcctttcaattctgttat 504

                    
Query: 305 attaaacat 313
           |||||||||
Sbjct: 505 attaaacat 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no171_l08.g1 MSMg01no171_l08.g1 CHROMAT_FILE:
MSMg01no171_l08.g1 PHD_FILE: MSMg01no171_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:59 2005
         (143 letters)



>mm_chr1_63260001_63260543
          Length = 543

 Score =  275 bits (142), Expect = 1e-78
 Identities = 142/142 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggtttaactggaataaaaatgacgctataaggcagggctgcatggcttccccacgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttggtttaactggaataaaaatgacgctataaggcagggctgcatggcttccccacgcaa 283

                                                                       
Query: 61  acccctagggccactagatctgtgtctgtgactccatttccatcatgggaagatttgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acccctagggccactagatctgtgtctgtgactccatttccatcatgggaagatttgcac 223

                                 
Query: 121 gcttccagcctcaccgtgcaat 142
           ||||||||||||||||||||||
Sbjct: 222 gcttccagcctcaccgtgcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)