Query= MSMg01no172_f15.b1 MSMg01no172_f15.b1 CHROMAT_FILE:
MSMg01no172_f15.b1 PHD_FILE: MSMg01no172_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:48 2005
(273 letters)
>mm_chr1_134017545_134018217
Length = 673
Score = 497 bits (257), Expect = e-145
Identities = 266/269 (98%)
Strand = Plus / Plus
Query: 5 gaattcttaacactcctgcaacagcctcccaaggaatcctgggagtacagacatgagtcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttaacactcctgcaacagcctcccaaggaatcctgggagtacagacatgagtcc 264
Query: 65 cagcactgatttagcggccttaactagggagaccctggggttcccaggggatttgggggc 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcactgatttagtggccttaactagggagaccctggggttcccaggggatttgggggc 324
Query: 125 tacttggctccatgcattgacttagagagaccacttattaaaaccctcagggggccagca 184
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 325 tacttggcttcatgcattgacttagagagaccgcttattaaaaccctcagggggccagca 384
Query: 185 ggtggcgccagaggcataggaatctttctggaaaccactgtaggcttcagctggcacaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtggcgccagaggcataggaatctttctggaaaccactgtaggcttcagctggcacaaa 444
Query: 245 gaaggccatactggtgtctcacaccctta 273
|||||||||||||||||||||||||||||
Sbjct: 445 gaaggccatactggtgtctcacaccctta 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no172_f15.g1 MSMg01no172_f15.g1 CHROMAT_FILE:
MSMg01no172_f15.g1 PHD_FILE: MSMg01no172_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:48 2005
(244 letters)
>mm_chr1_134185280_134185927
Length = 648
Score = 342 bits (177), Expect = 9e-99
Identities = 224/249 (89%), Gaps = 17/249 (6%)
Strand = Plus / Minus
Query: 1 tcacagcagactggagag-aacaaatactaactatgccattcccttagccaggcacggtg 59
|||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct: 520 tcacagcagactggagagaaacaaatactaactatcccattcccttaggaaggcacggtg 461
Query: 60 acacgataggaactcaccctcaccctcactcgcagtcccttagaagtgtgagctggggct 119
|| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 460 acccgataggaa------------ctcactcgcagtcccttagaagtgtgagctggggct 413
Query: 120 ----gggggtgtggcccagctggtacagcatgtgtaaggccttgaggaccaaaatcattg 175
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 412 gggggggggtgtggcccagctggtacagcacgtgtaaggccttgaggaccaaaatcattt 353
Query: 176 tgaaaagagcatcctggtctgttcagatgctgagatggcccagcagataagagtgcttgc 235
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgaaaagagcatcctgggctgctcagatgctgagatggcccagcagataagagtgcttgc 293
Query: 236 ctggcagcc 244
|||||||||
Sbjct: 292 ctggcagcc 284
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 648
Length adjustment: 9
Effective length of query: 235
Effective length of database: 639
Effective search space: 150165
Effective search space used: 150165
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
