BAC Information

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BAC

Clone NameMSMg01-172M22
Chromosome1 (Build37)
Map Location 154,365,836 - 154,366,019
singlet/doubletsinglet
Overlap geneRgl1
Upstream geneNiban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik, Glt25d2
Downstream geneEG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M22.T7 (MSMg01no172_m22.b1)MSMg01-172M22.TJ (MSMg01no172_m22.g1)
ACCAG368603AG368604
length725797
length of high quality
(start - end)
318 (41 - 358)185 (69 - 253)
definitionCHROMAT_FILE: MSMg01no172_m22.b1 PHD_FILE: MSMg01no172_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:21 2005CHROMAT_FILE: MSMg01no172_m22.g1 PHD_FILE: MSMg01no172_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CAAAGAAGTAGGCTTTAATGCCAGTGAAGGGATGGTCTTGCTAGTGAGGC
AAGAGCAAGCAGTCAAAGAGGAAAGTTTCGTCCTTCCATGACCTTATTTT
TATAGGCATTTAGAAAGAGGTGTGGCCCAGATTAGAGGTGGGTTTTCCCA
CCTCCAAGATCGAGATTTAAAGATGTCTTCCTACCTCAAATATATGGATT
AGAAATGGATTCTCCCACTACCAATTAAGCAAAAATCCCTCACAGGTATA
CCCCTCCACTTTGGGTATTGTTTTAACTCTAGATCCAGTCCAGTTGGCAA
CCGAGACTATTTANTTCCANNCCTANNCCCCCACTTTCTCCATGGAATTT
TTTTTACAATGCGATATTGTTTTACATAAACATTTTTAAGGGTTGCCTTT
CAGAAATATTTACGTAACACCTGCTGTGAGTTAGGCACTATTCTAAGTTC
TGAGGACACAGTAGGGAACAGAACAAAGTCTCTCAGTCTCTTACTGCATT
AGGGCACACAAATTTTAGTTAGAATTTCATTTAAAAAAAAACTACTAATT
TCTTCAAGAAGAGTCAATCCTATCCAGTGCAGAAGGTTCCATTGGCAGTC
CCAGTTCTTGACCCTTCCACCATTGCATAGTGAGAGGTGTCAGTAATGTG
CTTCCGCGCCATGCCCCCCCTATGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGCTGTGCAGAGAGCACTGTGCAGGGGAGAGT
GGAAGTGAATTTGACATTAAAAGGATAAAAGGTTCACTGATGCTCTTAGA
TCTGAGAGTGAATACAAAATAGTCCATATTTTAAAATATATATACACACA
CATATCGTGTGTGGTGTATGTATGTGTGTGTATGTGTGTGTGTGTGTGTT
TTTTTNTTTTTNTTTTTTTTTTTNTTTTTTTNTTTTTTTTNTTTTTNTTT
TTTTTNNNTTTTTTTTTTTTTTTCNNNNNCNNCNNTTTTNNNNTTNNNNT
TTTTTTTTTTCCCCNAAAACAAAAACCCCCANATTTNAAANNTAANTAAT
TNNNNTTTTTTNCCCCCCAAAAAAAAAAAAAAAAATCCGGGGGGGGGGGG
GGGTCTTCCCTTTCCTCCTCCTTCCTTCTTTTCTTCCCTTTTTTTCCCTT
TTTGTTTCGTTTTCCCCTTTTTTTTCCGCCTTCCCCGCTTATCCTTTTTT
GCTTTATTCCTTTGTTTCTTCTCCTCTCATCCCTTTCTTTCGTTATCTTC
TTTTTTTCTCATTTCTTTCCTTCTCCTATTTTCCCCCCCGTCTATCCACC
TCCCGCTTTCTTCACTTTTCGCCCTCTATTCCTTTATTGTTGTCCTTTCG
CCCCTTATTTCCCTCAATTTCTCTATAAGTTTTTCCTTCACTCCTCTCCT
ACTCCTTTTCTATGATCGCCCTCCACACGTTACATTTTCTATTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m22.g1 MSMg01no172_m22.g1 CHROMAT_FILE:
MSMg01no172_m22.g1 PHD_FILE: MSMg01no172_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:21 2005
         (185 letters)



>mm_chr1_154365682_154366266
          Length = 585

 Score =  302 bits (156), Expect = 1e-86
 Identities = 176/186 (94%), Gaps = 7/186 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctgtgcagagagcactgtgcaggggagagtggaagtgaatttgacattaaaaggataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agctgtgcagagagcactgtgcaggggagagtggaagtgaatttgacattaaaaggataa 279

                                                                       
Query: 61  aaggttcactgatgctcttagatctgagagtgaatacaaaatagtccatattttaaaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aaggttcactgatgctcttagatctgagagtgaatacaaaatagtccatattttaaaata 219

                                                                       
Query: 121 tatatacacacacatatcgtgtgtg-----gtgtatgtatgtgtgtgtatgtgtgtgtgt 175
           ||||||||||| |||||||||||||     ||||  || ||||||||| |||||||||||
Sbjct: 218 tatatacacacgcatatcgtgtgtgtatgcgtgt--gtttgtgtgtgtgtgtgtgtgtgt 161

                 
Query: 176 gtgtgt 181
           ||||||
Sbjct: 160 gtgtgt 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space:   102129
Effective search space used:   102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)